FreeSurfer 7.4.1-centos8_x86_64

FreeSurfer is a set of tools for analysis and visualization of structural and functional brain imaging data. FreeSurfer contains a fully automatic structural imaging stream for processing cross sectional and longitudinal data.

Accessing FreeSurfer 7.4.1-centos8_x86_64

To load the module for FreeSurfer 7.4.1-centos8_x86_64 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a module load FreeSurfer/7.4.1-centos8_x86_64

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Licensing

FreeSurfer licenses are free, but they use registrations to keep rough statistics on the number of users, which they can use in grants and presentations as a demonstration of their contribution to the neuroimaging community.

Please register for a licence here: https://surfer.nmr.mgh.harvard.edu/registration.html

Then to use your licence, set the FS_LICENSE environment variable with the path of the file, e.g. in your batch script:

export FS_LICENSE=${HOME}/.freesurfer_licence

More Information

For more information visit the FreeSurfer website.

Dependencies

This version of FreeSurfer has a direct dependency on: MCR/R2019b.8

Other Versions

These versions of FreeSurfer are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
7.2.0-centos8_x86_64	2021a
6.0.1-centos6_x86_64	2018b
6.0.1-centos6_x86_64	2019a

Last modified on 29th November 2023