SRA-Toolkit 3.0.3-gompi-2022a
There is a newer install of SRA-Toolkit
The SRA Toolkit, and the source-code SRA System Development Kit (SDK), will allow you to programmatically access data housed within SRA and convert it from the SRA formatAccessing SRA-Toolkit 3.0.3-gompi-2022a
To load the module for SRA-Toolkit 3.0.3-gompi-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2022a
module load SRA-Toolkit/3.0.3-gompi-2022a
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the SRA-Toolkit website.
Dependencies
This version of SRA-Toolkit has a direct dependency on: bzip2/1.0.8-GCCcore-11.3.0 file/5.43-GCCcore-11.3.0 gompi/2022a HDF5/1.12.2-gompi-2022a Java/11 libxml2/2.9.13-GCCcore-11.3.0 ncbi-vdb/3.0.2-gompi-2022a OpenSSL/1.1 zlib/1.2.12-GCCcore-11.3.0
Required By
This version of SRA-Toolkit is a direct dependent of: HISAT2/2.2.1-gompi-2022a
Other Versions
These versions of SRA-Toolkit are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Version | BEAR Apps Version |
---|---|
3.0.10-gompi-2022b | 2022b |
2.10.9-gompi-2020b | 2020b |
2.9.6-1-centos_linux64 | 2019a |
2.9.0-centos_linux64 | 2018b |
Last modified on 12th August 2024