SRA-Toolkit 3.0.10-gompi-2022b

The SRA Toolkit, and the source-code SRA System Development Kit (SDK), will allow you to programmatically access data housed within SRA and convert it from the SRA format

Accessing SRA-Toolkit 3.0.10-gompi-2022b

To load the module for SRA-Toolkit 3.0.10-gompi-2022b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b module load SRA-Toolkit/3.0.10-gompi-2022b

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the SRA-Toolkit website.

Dependencies

This version of SRA-Toolkit has a direct dependency on: bzip2/1.0.8-GCCcore-12.2.0 file/5.45-GCCcore-12.2.0 gompi/2022b HDF5/1.14.0-gompi-2022b Java/11 libxml2/2.10.3-GCCcore-12.2.0 ncbi-vdb/3.0.10-gompi-2022b OpenSSL/1.1 zlib/1.2.12-GCCcore-12.2.0

Required By

This version of SRA-Toolkit is a direct dependent of: HISAT2/2.2.1-gompi-2022b

Other Versions

These versions of SRA-Toolkit are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
3.0.3-gompi-2022a	2022a
2.10.9-gompi-2020b	2020b
2.9.6-1-centos_linux64	2019a
2.9.0-centos_linux64	2018b

Last modified on 2nd February 2024