vcflib 1.0.9-foss-2022b-R-4.3.1

There is a newer install of vcflib

vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed genetic variations between individuals.

Accessing vcflib 1.0.9-foss-2022b-R-4.3.1

To load the module for vcflib 1.0.9-foss-2022b-R-4.3.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022b
module load vcflib/1.0.9-foss-2022b-R-4.3.1

BEAR Apps Version

2022b

Architectures

EL8-cascadelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the vcflib website.

Dependencies

This version of vcflib has a direct dependency on: bzip2/1.0.8-GCCcore-12.2.0 fastahack/1.0.0-GCCcore-12.2.0 filevercmp/20191210-GCCcore-12.2.0 foss/2022b fsom/20151117-GCCcore-12.2.0 HTSlib/1.17-GCC-12.2.0 intervaltree/0.1-GCCcore-12.2.0 multichoose/1.0.3-GCCcore-12.2.0 Perl/5.36.0-GCCcore-12.2.0 Python/3.10.8-GCCcore-12.2.0 R/4.3.1-foss-2022b smithwaterman/20160702-GCCcore-12.2.0 tabixpp/1.1.2-GCC-12.2.0 WFA2/2.3.3-GCCcore-12.2.0 XZ/5.2.7-GCCcore-12.2.0 zlib/1.2.12-GCCcore-12.2.0

Required By

This version of vcflib is a direct dependent of: freebayes/1.3.8-foss-2022b-R-4.3.1

Other Versions

These versions of vcflib are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 25th July 2024