VEP 113-GCC-12.3.0

VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

Accessing VEP 113-GCC-12.3.0

To load the module for VEP 113-GCC-12.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a module load VEP/113-GCC-12.3.0

BEAR Apps Version

2023a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

Bio::EnsEMBL::XS 2.3.2

More Information

For more information visit the VEP website.

Dependencies

This version of VEP has a direct dependency on: Archive-Zip/1.68-GCCcore-12.3.0 Bio-DB-HTS/3.01-GCC-12.3.0 BioPerl/1.7.8-GCCcore-12.3.0 DBD-mysql/4.052-GCC-12.3.0 GCC/12.3.0 Perl/5.36.1-GCCcore-12.3.0 Perl-bundle-CPAN/5.36.1-GCCcore-12.3.0

Other Versions

These versions of VEP are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
112-GCC-12.2.0	2022b
107-GCC-11.3.0	2022a
99.2-foss-2019b-Perl-5.30.0	2019b
96.0-foss-2019a-Perl-5.28.1	2019a

Last modified on 1st November 2024