HISAT2 2.1.0-foss-2019a
There is a newer install of HISAT2
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome).Accessing HISAT2 2.1.0-foss-2019a
To load the module for HISAT2 2.1.0-foss-2019a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load HISAT2/2.1.0-foss-2019a
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the HISAT2 website.
Dependencies
This version of HISAT2 has a direct dependency on: foss/2019a ncbi-vdb/2.9.6-foss-2019a NGS/2.9.6-foss-2019a-Java-11
Required By
This version of HISAT2 is a direct dependent of: RNA_MUTECT/1.0-foss-2019a
Other Versions
These versions of HISAT2 are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
| Version | BEAR Apps Version |
|---|---|
| 2.2.1-gompi-2022b | 2022b |
| 2.2.1-gompi-2022a | 2022a |
| 2.2.1-foss-2019b | 2019b |
Last modified on 1st August 2019