HTSlib 1.9-foss-2019a

There is a newer install of HTSlib

A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix

Accessing HTSlib 1.9-foss-2019a

To load the module for HTSlib 1.9-foss-2019a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load HTSlib/1.9-foss-2019a

BEAR Apps Version

2019a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the HTSlib website.

Dependencies

This version of HTSlib has a direct dependency on: bzip2/1.0.6-GCCcore-8.2.0 cURL/7.63.0-GCCcore-8.2.0 foss/2019a XZ/5.2.4-GCCcore-8.2.0 zlib/1.2.11-GCCcore-8.2.0

Required By

This version of HTSlib is a direct dependent of: BCFtools/1.9-foss-2019a nanopolish/0.11.2-foss-2019a

Other Versions

These versions of HTSlib are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
1.20-GCC-12.3.0	2023a
1.18-GCC-12.3.0	2023a
1.17-GCC-12.2.0	2022b
1.16-GCC-11.3.0	2022a
1.15.1-GCC-11.3.0	2022a
1.14-GCC-11.2.0	2021b
1.12-GCC-10.3.0	2021a
1.11-GCC-10.2.0	2020b
1.10.2-GCCcore-8.3.0	2019b
1.10.2-GCC-9.3.0	2020a
1.9-GCC-8.2.0-2.31.1	2019a
1.9-foss-2018b	2018b

Last modified on 19th August 2019