VEP 96.0-foss-2019a-Perl-5.28.1

There is a newer install of VEP

VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions.

Accessing VEP 96.0-foss-2019a-Perl-5.28.1

To load the module for VEP 96.0-foss-2019a-Perl-5.28.1 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load VEP/96.0-foss-2019a-Perl-5.28.1

BEAR Apps Version

2019a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

Archive::Zip 1.67
Bio::EnsEMBL::XS 2.3.2
ExtUtils::CppGuess 0.20
ExtUtils::MakeMaker 7.38
Set::IntervalTree 0.12
SUPER 1.20190531
Test::MockModule 0.171.0

More Information

For more information visit the VEP website.

Dependencies

This version of VEP has a direct dependency on: Bio-DB-BigFile/1.07-foss-2019a-Perl-5.28.1 Bio-DB-HTS/3.01-GCC-8.2.0-2.31.1-Perl-5.28.1 BioPerl/1.7.2-GCCcore-8.2.0-Perl-5.28.1 DBD-mysql/4.050-foss-2019a-Perl-5.28.1 foss/2019a Perl/5.28.1-GCCcore-8.2.0

Other Versions

These versions of VEP are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
113-GCC-12.3.0	2023a
112-GCC-12.2.0	2022b
107-GCC-11.3.0	2022a
99.2-foss-2019b-Perl-5.30.0	2019b

Last modified on 3rd December 2019