HISAT2 2.2.1-foss-2019b

There is a newer install of HISAT2

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome).

Accessing HISAT2 2.2.1-foss-2019b

To load the module for HISAT2 2.2.1-foss-2019b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load HISAT2/2.2.1-foss-2019b

BEAR Apps Version

2019b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the HISAT2 website.

Dependencies

This version of HISAT2 has a direct dependency on: foss/2019b ncbi-vdb/2.10.4-gompi-2019b NGS/2.10.4-GCCcore-8.3.0-Java-11

Required By

This version of HISAT2 is a direct dependent of: funannotate/1.8.1-foss-2019b-Python-2.7.16 funannotate/1.8.1-foss-2019b-Python-3.7.4

Other Versions

These versions of HISAT2 are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 12th October 2020