PhyloPhlAn 3.0.2-foss-2021b

There is a newer install of PhyloPhlAn

PhyloPhlAn is an integrated pipeline for large-scale phylogenetic profiling of genomes and metagenomes. PhyloPhlAn is an accurate, rapid, and easy-to-use method for large-scale microbial genome characterization and phylogenetic analysis at multiple levels of resolution.

Accessing PhyloPhlAn 3.0.2-foss-2021b

To load the module for PhyloPhlAn 3.0.2-foss-2021b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2021b
module load PhyloPhlAn/3.0.2-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the PhyloPhlAn website.

Dependencies

This version of PhyloPhlAn has a direct dependency on: Biopython/1.79-foss-2021b BLAST+/2.12.0-gompi-2021b DendroPy/4.5.2-GCCcore-11.2.0 DIAMOND/2.0.13-GCC-11.2.0 FastTree/2.1.11-GCCcore-11.2.0 foss/2021b IQ-TREE/2.2.1-gompi-2021b MAFFT/7.490-gompi-2021b-with-extensions matplotlib/3.4.3-foss-2021b MUSCLE/5.1-GCCcore-11.2.0 Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b Seaborn/0.11.2-foss-2021b SEPP/4.5.1-foss-2021b trimAl/1.4.1-GCCcore-11.2.0 USEARCH/11.0.667-i86linux32

Required By

This version of PhyloPhlAn is a direct dependent of: MetaPhlAn/3.0.14-foss-2021b

Other Versions

These versions of PhyloPhlAn are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th July 2022