picard 2.25.1-Java-11

There is a newer install of picard

A set of tools (in Java) for working with next generation sequencing data in the BAM format.

Accessing picard 2.25.1-Java-11

To load the module for picard 2.25.1-Java-11 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a
module load picard/2.25.1-Java-11

BEAR Apps Version

2022a

Architectures

EL8-cascadelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

CollectInsertSizeMetrics

If you want to use CollectInsertSizeMetrics then you must load R please select a version of R in the same BEAR Apps Version as picard.

More Information

For more information visit the picard website.

Dependencies

This version of picard has a direct dependency on: Java/11

Required By

This version of picard is a direct dependent of: Trinity/2.15.1-foss-2022b Trinity/2.15.1-foss-2022a

Other Versions

These versions of picard are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 9th January 2023