Pysam 0.22.0-GCC-12.3.0

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

Accessing Pysam 0.22.0-GCC-12.3.0

To load the module for Pysam 0.22.0-GCC-12.3.0 please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2023a module load Pysam/0.22.0-GCC-12.3.0

BEAR Apps Version

2023a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the Pysam website.

Dependencies

This version of Pysam has a direct dependency on: cURL/8.0.1-GCCcore-12.3.0 GCC/12.3.0 ncurses/6.4-GCCcore-12.3.0 Python/3.11.3-GCCcore-12.3.0 Python-bundle-PyPI/2023.06-GCCcore-12.3.0 XZ/5.4.2-GCCcore-12.3.0

Required By

This version of Pysam is a direct dependent of: modbamtools/0.4.8-gfbf-2023a

Other Versions

These versions of Pysam are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
0.21.0-GCC-12.2.0	2022b
0.20.0-GCC-11.3.0	2022a
0.19.1-GCC-11.3.0	2022a
0.18.0-GCC-11.2.0	2021b
0.17.0-GCC-11.2.0	2021b
0.16.0.1-GCC-9.3.0	2020a
0.16.0.1-GCC-10.3.0	2021a
0.16.0.1-GCC-10.2.0	2020b
0.15.3-GCC-8.3.0	2019b
0.15.2-foss-2019a	2019a
0.15.1-foss-2018b-Python-3.6.6	2018b
0.15.1-foss-2018b-Python-2.7.15	2018b
0.13-foss-2018b-Python-3.6.6	2018b

Last modified on 8th November 2024