Pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

More Information

For more information visit the Pysam website.

Available Versions

These versions of Pysam are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
0.22.0-GCC-12.3.0	2023a
0.21.0-GCC-12.2.0	2022b
0.20.0-GCC-11.3.0	2022a
0.19.1-GCC-11.3.0	2022a
0.18.0-GCC-11.2.0	2021b
0.17.0-GCC-11.2.0	2021b
0.16.0.1-GCC-9.3.0	2020a
0.16.0.1-GCC-10.3.0	2021a
0.16.0.1-GCC-10.2.0	2020b
0.15.3-GCC-8.3.0	2019b
0.15.2-foss-2019a	2019a
0.15.1-foss-2018b-Python-3.6.6	2018b
0.15.1-foss-2018b-Python-2.7.15	2018b
0.13-foss-2018b-Python-3.6.6	2018b