R 4.1.2-foss-2021b
R is a free software environment for statistical computing and graphics.Accessing R 4.1.2-foss-2021b
To load the module for R 4.1.2-foss-2021b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2021b
module load R/4.1.2-foss-2021b
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Plotting in R and X11 Errors
If you receive an error message
unable to open connection to X11 display
when generating plots then you should either:
- add
options(bitmapType='cairo')
before plotting - or change the plot command to include
type="cairo"
Extensions
- abc 2.1
- abc.data 1.0
- abe 3.0.1
- abind-1.4-5
- acepack 1.4.1
- adabag 4.2
- ade4-1.7-18
- ADGofTest 0.3
- aggregation 1.0.1
- AICcmodavg-2.3-1
- akima-0.6-2.2
- alabama-2015.3-1
- AlgDesign 1.2.0
- alluvial-0.1-2
- AnalyzeFMRI-1.1-24
- animation 2.7
- aod 1.3.1
- apcluster 1.4.9
- ape 5.5
- argparse 2.1.2
- arm-1.12-2
- askpass 1.1
- asnipe 1.1.16
- assertive-0.3-6
- assertive.base-0.0-9
- assertive.code-0.0-3
- assertive.data-0.0-3
- assertive.data.uk-0.0-2
- assertive.data.us-0.0-2
- assertive.datetimes-0.0-3
- assertive.files-0.0-2
- assertive.matrices-0.0-2
- assertive.models-0.0-2
- assertive.numbers-0.0-2
- assertive.properties-0.0-4
- assertive.reflection-0.0-5
- assertive.sets-0.0-3
- assertive.strings-0.0-3
- assertive.types-0.0-3
- assertthat 0.2.1
- AUC 0.3.0
- audio-0.1-8
- aws-2.5-1
- awsMethods-1.1-1
- b a
- backports 1.3.0
- bacr 1.0.1
- bartMachine 1.2.6
- bartMachineJARs 1.1
- base64 2.0
- base64enc-0.1-3
- BatchJobs 1.8
- batchmeans-1.0-4
- BayesianTools 0.1.7
- bayesm-3.1-4
- BayesPen 1.0
- bayesplot 1.8.1
- BB-2019.10-1
- BBmisc 1.11
- bbmle 1.0.24
- BCEE 1.3.0
- BDgraph 2.64
- bdsmatrix-1.3-4
- beanplot 1.2
- beeswarm 0.4.0
- betareg-3.1-4
- BH-1.75.0-0
- BiasedUrn 1.07
- bibtex 0.4.2.3
- BIGL 1.6.5
- bigmemory 4.5.36
- bigmemory.sri 0.1.3
- bindr 0.1.1
- bindrcpp 0.2.2
- bio3d-2.4-2
- biom 0.3.12
- biomod2 3.5.1
- bit 4.0.4
- bit64 4.0.5
- bitops-1.0-7
- blavaan-0.3-17
- blob 1.2.2
- BMA 3.18.15
- bmp 0.3
- bnlearn 4.7
- bold 1.2.0
- boot-1.3-28
- bootstrap 2019.6
- Boruta 7.0.0
- brew-1.0-6
- brglm 0.7.2
- bridgedist 0.1.0
- bridgesampling-1.1-2
- brio 1.1.2
- brms 2.16.1
- Brobdingnag-1.2-6
- broom 0.7.10
- broom.helpers 1.4.0
- broom.mixed 0.2.7
- bslib 0.3.1
- bst-0.3-23
- c o
- cachem 1.0.6
- Cairo-1.5-12.2
- calibrate 1.7.7
- callr 3.7.0
- car-3.0-11
- carData-3.0-4
- caret-6.0-90
- catlearn 0.8
- caTools 1.18.2
- CBPS 0.22
- celestial 1.4.6
- cellranger 1.1.0
- cgdsr 1.3.0
- cghFLasso-0.2-1
- checkmate 2.0.0
- chemometrics 1.4.2
- chron-2.3-56
- circlize 0.4.13
- circular-0.4-93
- class-7.3-19
- classInt-0.4-3
- cli 3.1.0
- clipr 0.7.1
- clisymbols 1.2.0
- clue-0.3-60
- cluster 2.1.2
- clusterGeneration 1.3.7
- clusterRepro 0.9
- clustree 0.4.3
- clValid 0.7
- cmprsk-2.2-11
- cNORM 2.1.0
- cobalt 4.3.1
- cobs-1.3-4
- coda-0.19-4
- codetools-0.2-18
- coin-1.4-2
- collapse 1.6.5
- colorspace-2.0-2
- colourpicker 1.1.1
- combinat-0.0-8
- ComICS 1.0.4
- commonmark 1.7
- compositions-2.0-2
- CompQuadForm 1.4.3
- conditionz 0.1.0
- conquer 1.2.0
- copCAR-2.0-4
- copula-1.0-1
- corpcor 1.6.10
- corrplot 0.90
- covr 3.5.1
- CovSel 1.2.1
- covsim 0.2.1
- cowplot 1.1.1
- coxed 0.3.3
- coxme-2.2-16
- cpp11 0.4.0
- crayon 1.4.2
- credentials 1.3.1
- crosstalk 1.1.1
- crul 1.1.0
- cSEM 0.4.0
- csSAM 1.2.4
- ctmle 0.1.2
- cubature 2.0.4.2
- cubelyr 1.0.1
- curl 4.3.2
- cvAUC 1.1.0
- CVST-0.2-2
- d a
- d3Network 0.5.2.1
- dagitty-0.3-1
- data.table 1.14.2
- data.tree 1.0.0
- DataCombine 0.2.21
- date-1.2-39
- dbarts-0.9-20
- DBI 1.1.1
- dbplyr 2.1.1
- dcurver 0.9.2
- ddalpha 1.3.11
- deal-1.2-39
- debugme 1.1.0
- deldir-1.0-6
- dendextend 1.15.2
- DEoptim-2.2-6
- DEoptimR-1.0-9
- Deriv 4.1.3
- desc 1.4.0
- DescTools 0.99.43
- deSolve 1.30
- devtools 2.4.2
- dfidx-0.0-4
- DHARMa 0.4.4
- dHSIC 2.1
- diagram 1.6.5
- DiagrammeR 1.0.6.1
- DiceKriging 1.6.0
- dichromat-2.0-0
- diffobj 0.3.5
- digest 0.6.28
- dimRed 0.2.3
- diptest-0.76-0
- DiscriMiner-0.1-29
- dismo-1.3-5
- distillery-1.2-1
- distr 2.8.0
- distrEx 2.8.0
- distributional 0.2.2
- DistributionUtils-0.6-0
- diveRsity 1.9.90
- DMCfun 2.0.2
- docstring 1.0.0
- doMC 1.3.7
- doParallel 1.0.16
- doRNG 1.8.2
- doSNOW 1.0.19
- dotCall64-1.0-1
- downloader 0.4
- dplyr 1.0.7
- dr 3.0.10
- drgee 1.1.10
- DRR 0.0.4
- drugCombo 1.2.1
- DT 0.19
- dtangle 2.0.9
- dtplyr 1.1.0
- DTRreg 1.7
- dtw-1.22-3
- dummies 1.5.6
- dygraphs 1.1.1.6
- dynamicTreeCut-1.63-1
- e1071-1.7-9
- earth 5.3.1
- EasyABC 1.5
- elementR 1.3.7
- ellipse 0.4.2
- ellipsis 0.3.2
- emdbook 1.3.12
- emulator-1.2-21
- energy-1.7-8
- ENMeval 2.0.1
- entropy 1.3.1
- EnvStats 2.4.0
- ergm 4.1.2
- ergm.count 4.0.2
- evaluate 0.14
- EValue 4.1.2
- evd-2.3-3
- Exact 3.0
- expm-0.999-6
- ExPosition 2.8.23
- expsmooth 2.3
- extrafont 0.17
- extrafontdb 1.0
- extRemes-2.1-1
- FactoMineR 2.4
- FactorCopula 0.8
- fail 1.3
- fansi 0.5.0
- farver 2.1.0
- fastcluster 1.2.3
- fasterize 1.0.3
- fastICA-1.2-3
- fastmap 1.1.0
- fastmatch-1.1-3
- fdrtool 1.2.16
- feather 0.3.5
- ff 4.0.5
- ffbase 0.13.3
- fftw-1.0-6
- fftwtools-0.9-11
- fields 13.3
- filehash-2.4-2
- finalfit 1.0.3
- findpython 1.0.7
- fishMod 0.29
- fitdistrplus-1.1-6
- flashClust-1.01-2
- flexclust-1.4-0
- flexmix-2.3-17
- fma 2.4
- FME 1.3.6.2
- fmri 1.9.6
- FNN 1.1.3
- fontawesome 0.2.2
- forcats 0.5.1
- foreach 1.5.1
- forecast 8.15
- foreign-0.8-81
- formatR 1.11
- Formula-1.2-4
- formula.tools 1.7.1
- fossil 0.4.0
- fpc-2.2-9
- fpp 0.5
- fracdiff-1.5-1
- fs 1.5.0
- futile.logger 1.4.3
- futile.options 1.0.1
- future 1.23.0
- future.apply 1.8.1
- g r
- g r
- g r
- gam 1.20
- gamlss-5.3-4
- gamlss.data-6.0-1
- gamlss.dist-5.3-2
- gamlss.tr-5.1-7
- gamm4-0.2-6
- gap-1.2.3-1
- gapfill-0.9.6-1
- gargle 1.2.0
- gaussquad-1.0-2
- gbm 2.1.8
- gbRd-0.4-11
- gclus 1.3.2
- gdalUtils 2.0.3.2
- gdata 2.18.0
- gdistance-1.3-6
- gee-4.13-20
- geepack-1.3-2
- geex 1.0.12
- geiger 2.0.7
- GeneNet 1.2.15
- generics 0.1.1
- genoPlotR 0.8.11
- GenSA 1.1.7
- geojsonsf 2.0.1
- geometries 0.2.0
- geometry 0.4.5
- gert 1.4.1
- getopt 1.20.3
- GetoptLong 1.0.5
- GGally 2.1.2
- ggbeeswarm 0.6.0
- ggdag 0.2.4
- ggExtra 0.9
- ggfan 0.1.3
- ggforce 0.3.3
- ggnetwork 0.5.10
- ggplot2 3.3.5
- ggpubr 0.4.0
- ggraph 2.0.5
- ggrepel 0.9.1
- ggridges 0.5.3
- ggsci 2.9
- ggsignif 0.6.3
- ggvis 0.4.7
- gh 1.3.0
- GillespieSSA 0.6.1
- git2r 0.28.0
- gitcreds 0.1.1
- GJRM-0.2-5.1
- glasso 1.11
- gld 2.6.2
- gllvm 1.3.1
- glmmML 1.1.1
- glmmTMB 1.1.2.3
- glmnet-4.1-2
- GlobalOptions 0.1.2
- globals 0.14.0
- glue 1.4.2
- gmm-1.6-6
- gmodels 2.18.1
- gmp-0.6-2
- gnumeric-0.7-8
- goftest-1.2-3
- gomms 1.0
- googledrive 2.0.0
- googlesheets4 1.0.0
- gower 0.2.2
- GPArotation-2014.11-1
- gplots 3.1.1
- graphlayouts 0.7.1
- grf 2.0.2
- gridBase-0.4-7
- gridExtra 2.3
- grImport2-0.2-0
- grpreg 3.4.0
- GSA 1.03.1
- gsalib 2.1
- gsl-2.1-7
- gsw-1.0-6
- gt 0.3.1
- gtable 0.3.0
- gtools 3.9.2
- gtsummary 1.5.0
- GUTS 1.1.1
- gWidgets2-1.0-8
- gWidgets2tcltk-1.0-6
- GxEScanR 2.0.2
- h2o 3.34.0.3
- hal9001 0.4.1
- harmony 0.1.0
- hash 2.2.6.1
- haven 2.4.3
- hdf5r 1.3.4
- hdm 0.3.1
- heatmap3 1.1.9
- here 1.0.1
- hexbin 1.28.2
- HiddenMarkov-1.8-13
- highr 0.9
- Hmisc-4.6-0
- hms 1.1.1
- htmlTable 2.3.0
- htmltools 0.5.2
- htmlwidgets 1.5.4
- httpcode 0.3.0
- httpuv 1.6.3
- httr 1.4.2
- huge 1.3.5
- hunspell 3.0.1
- hwriter 1.3.2
- HWxtest 1.1.9
- ica-1.0-2
- IDPmisc 1.1.20
- idr 1.2
- ids 1.0.1
- ie2misc 0.8.6
- igraph 1.2.7
- image.binarization 0.1.2
- imager 0.42.10
- imagerExtra 1.3.2
- ineq-0.2-13
- influenceR 0.1.0.1
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- ini 0.3.1
- inline 0.3.19
- intergraph-2.0-2
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- inum-1.0-4
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- irace 3.4.1
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- isoband 0.2.5
- ISOcodes 2021.02.24
- iterators 1.0.13
- itertools-0.1-3
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- jiebaR 0.11
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- jsonify 1.2.1
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- labdsv-2.0-1
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- lmerTest-3.1-3
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- Lmoments-1.3-1
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- m e
- magic-1.5-9
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- mathjaxr-1.4-0
- matlab 1.0.2
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- p a
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- pkgconfig 2.0.3
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- png-0.1-7
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- PresenceAbsence 1.1.9
- preseqR 4.0.0
- prettyGraphs 2.1.6
- prettyunits 1.1.1
- pROC 1.18.0
- processx 3.5.2
- prodlim 2019.11.13
- profileModel 0.6.1
- proftools-0.99-3
- progress 1.2.2
- progressr 0.9.0
- projpred 2.0.2
- promises 1.2.0.1
- proto 1.0.0
- proxy-0.4-26
- pryr 0.1.5
- ps 1.6.0
- pscl 1.5.5
- pspline-1.0-18
- psych 2.1.9
- Publish 2020.12.23
- pulsar 0.3.7
- purrr 0.3.4
- pvclust-2.2-0
- qgam 1.3.3
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- qqman 0.1.8
- qrnn 2.0.5
- quadprog-1.5-8
- quantmod 0.4.18
- quantreg 5.86
- questionr 0.7.5
- R.cache 0.15.0
- R.matlab 3.6.2
- R.methodsS3 1.8.1
- R.oo 1.24.0
- R.rsp 0.44.0
- R.utils 2.11.0
- R6 2.5.1
- randomForest-4.6-14
- randomForestSRC 2.13.0
- randtoolbox 1.31.1
- rangeModelMetadata 0.1.4
- ranger 0.13.1
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More Information
For more information visit the R website.
Dependencies
This version of R has a direct dependency on: bzip2/1.0.8-GCCcore-11.2.0 cairo/1.16.0-GCCcore-11.2.0 cURL/7.78.0-GCCcore-11.2.0 FFTW/3.3.10-gompi-2021b foss/2021b GDAL/3.3.2-foss-2021b GLPK/5.0-GCCcore-11.2.0 GMP/6.2.1-GCCcore-11.2.0 GSL/2.7-GCC-11.2.0 HDF5/1.12.1-gompi-2021b ICU/69.1-GCCcore-11.2.0 ImageMagick/7.1.0-4-GCCcore-11.2.0 Java/11 libgit2/1.1.1-GCCcore-11.2.0 libGLU/9.0.2-GCCcore-11.2.0 libjpeg-turbo/2.0.6-GCCcore-11.2.0 libpng/1.6.37-GCCcore-11.2.0 libreadline/8.1-GCCcore-11.2.0 libsndfile/1.0.31-GCCcore-11.2.0 LibTIFF/4.3.0-GCCcore-11.2.0 libxml2/2.9.10-GCCcore-11.2.0 Mesa/21.1.7-GCCcore-11.2.0 MPFR/4.1.0-GCCcore-11.2.0 ncurses/6.2-GCCcore-11.2.0 NLopt/2.7.0-GCCcore-11.2.0 nodejs/14.17.6-GCCcore-11.2.0 OpenSSL/1.1 PCRE2/10.37-GCCcore-11.2.0 SQLite/3.36-GCCcore-11.2.0 Tk/8.6.11-GCCcore-11.2.0 UDUNITS/2.2.28-GCCcore-11.2.0 X11/20210802-GCCcore-11.2.0 XZ/5.2.5-GCCcore-11.2.0 zlib/1.2.11-GCCcore-11.2.0
Required By
This version of R is a direct dependent of: arrow-R/6.0.0.2-foss-2021b-R-4.1.2 R-bundle-Bioconductor/3.14-foss-2021b-R-4.1.2
Other Versions
These versions of R are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Last modified on 26th May 2022