MetaPhlAn 3.0.14-foss-2021b

There is a newer install of MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

Accessing MetaPhlAn 3.0.14-foss-2021b

To load the module for MetaPhlAn 3.0.14-foss-2021b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2021b
module load MetaPhlAn/3.0.14-foss-2021b

BEAR Apps Version

2021b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

More Information

For more information visit the MetaPhlAn website.

Dependencies

This version of MetaPhlAn has a direct dependency on: biom-format/2.1.12-foss-2021b Biopython/1.79-foss-2021b CMSeq/1.0.4-foss-2021b DendroPy/4.5.2-GCCcore-11.2.0 foss/2021b h5py/3.6.0-foss-2021b PhyloPhlAn/3.0.2-foss-2021b Pysam/0.18.0-GCC-11.2.0 Python/3.9.6-GCCcore-11.2.0 SciPy-bundle/2021.10-foss-2021b

Other Versions

These versions of MetaPhlAn are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 14th July 2022