R 3.6.0-foss-2019a

There is a newer install of R

R is a free software environment for statistical computing and graphics.

Accessing R 3.6.0-foss-2019a

To load the module for R 3.6.0-foss-2019a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load R/3.6.0-foss-2019a

BEAR Apps Version

2019a

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Plotting in R and X11 Errors

If you receive an error message unable to open connection to X11 display when generating plots then you should either:

• add options(bitmapType='cairo') before plotting
• or change the plot command to include type="cairo"

Extensions

• abc 2.1
• abc.data 1.0
• abind-1.4-5
• acepack 1.4.1
• adabag 4.2
• ade4-1.7-13
• ADGofTest 0.3
• aggregation 1.0.1
• akima-0.6-2
• AlgDesign-1.1-7.3
• animation 2.6
• aod 1.3.1
• ape 5.3
• arm-1.10-1
• askpass 1.1
• asnipe 1.1.11
• assertthat 0.2.1
• AUC 0.3.0
• audio-0.1-6
• b a
• backports 1.1.4
• bartMachine 1.2.4.2
• bartMachineJARs 1.1
• base64 2.0
• base64enc-0.1-3
• BatchJobs 1.8
• BayesianTools 0.1.6
• bayesm-3.1-1
• BB-2014.10-1
• BBmisc 1.11
• BDgraph 2.59
• beanplot 1.2
• beeswarm 0.2.3
• BH-1.69.0-1
• BiasedUrn 1.07
• bibtex 0.4.2
• bigmemory 4.5.33
• bigmemory.sri 0.1.3
• bindr 0.1.1
• bindrcpp 0.2.2
• bio3d-2.3-4
• biom 0.3.12
• bit-1.1-14
• bit64-0.9-7
• bitops-1.0-6
• blob 1.1.1
• bmp 0.3
• bnlearn 4.4.1
• bold 0.8.6
• boot-1.3-22
• bootstrap 2017.2
• brew-1.0-6
• brglm 0.6.2
• bridgedist 0.1.0
• bridgesampling-0.6-0
• Brobdingnag-1.2-6
• broom 0.5.2
• bst-0.3-17
• Cairo-1.5-10
• calibrate 1.7.2
• callr 3.2.0
• car-3.0-3
• carData-3.0-2
• caret-6.0-84
• caTools 1.17.1.2
• cellranger 1.1.0
• cgdsr 1.2.10
• cghFLasso-0.2-1
• checkmate 1.9.3
• chemometrics 1.4.2
• chron-2.3-53
• circlize 0.4.6
• circular-0.4-93
• class-7.3-15
• classInt-0.3-3
• cli 1.1.0
• clipr 0.6.0
• clisymbols 1.2.0
• cluster 2.0.9
• clusterGeneration 1.3.4
• clusterRepro 0.9
• clustree 0.4.0
• clValid-0.6-6
• cobs-1.3-3
• coda-0.19-2
• codetools-0.2-16
• coin-1.3-0
• colorspace-1.4-1
• combinat-0.0-8
• ComICS 1.0.4
• commonmark 1.7
• compositions-1.40-2
• corpcor 1.6.9
• cowplot 0.9.4
• crayon 1.3.4
• crosstalk 1.0.0
• crul 0.7.4
• csSAM 1.2.4
• cubature 2.0.3
• curl 3.3
• cvAUC 1.1.0
• CVST-0.2-2
• d a
• d3Network 0.5.2.1
• data.table 1.12.2
• DBI 1.0.0
• dbplyr 1.4.1
• ddalpha 1.3.9
• deal-1.2-39
• debugme 1.1.0
• deldir-0.1-16
• dendextend 1.12.0
• DEoptimR-1.0-8
• Deriv 3.8.5
• desc 1.2.0
• deSolve 1.21
• devtools 2.0.2
• DHARMa 0.2.4
• diagram 1.6.4
• DiagrammeR 1.0.1
• dichromat-2.0-0
• digest 0.6.19
• dimRed 0.2.3
• diptest-0.75-7
• DiscriMiner-0.1-29
• dismo-1.1-4
• distillery-1.0-6
• distr 2.8.0
• distrEx 2.8.0
• DistributionUtils-0.6-0
• diveRsity 1.9.90
• doMC 1.3.5
• doParallel 1.0.14
• doRNG 1.7.1
• doSNOW 1.0.16
• dotCall64-1.0-0
• downloader 0.4
• dplyr 0.8.1
• DRR 0.0.3
• DT 0.6
• dtangle 0.3.1
• DTRreg 1.3
• dtw-1.20-1
• dummies 1.5.6
• dynamicTreeCut-1.63-1
• e1071-1.7-2
• EasyABC 1.5
• ellipse 0.4.1
• ellipsis 0.1.0
• emulator-1.2-20
• energy-1.7-5
• ergm 3.10.1
• ergm.count 3.4.0
• evaluate 0.14
• expm-0.999-4
• expsmooth 2.3
• extrafont 0.17
• extrafontdb 1.0
• extRemes-2.0-10
• FactoMineR 1.41
• fail 1.3
• fansi 0.4.0
• farver 1.1.0
• fastcluster 1.1.25
• fastICA-1.2-1
• fastmatch-1.1-0
• fdrtool 1.2.15
• feather 0.3.3
• ff-2.2-14
• ffbase 0.12.7
• fftw-1.0-5
• fields-9.8-3
• filehash-2.4-2
• fishMod 0.29
• fitdistrplus-1.0-14
• flashClust-1.01-2
• flexclust-1.4-0
• flexmix-2.3-15
• fma 2.3
• FME 1.3.5
• FNN 1.1.3
• forcats 0.4.0
• foreach 1.4.4
• forecast 8.7
• foreign-0.8-71
• formatR 1.6
• Formula-1.2-3
• fossil 0.3.7
• fpc-2.2-1
• fpp 0.5
• fracdiff-1.4-2
• fs 1.3.1
• futile.logger 1.4.3
• futile.options 1.0.1
• future 1.13.0
• g r
• g r
• g r
• gam 1.16
• gamlss-5.1-4
• gamlss.data-5.1-4
• gamlss.dist-5.1-4
• gamlss.tr-5.1-0
• gap 1.2.1
• gapfill 0.9.6
• gbm 2.1.5
• gbRd-0.4-11
• gclus 1.3.2
• gdata 2.18.0
• gdistance-1.2-2
• gee-4.13-19
• geepack-1.2-1
• geiger 2.0.6.2
• GeneNet 1.2.13
• generics 0.0.2
• GenSA 1.1.7
• geometry 0.4.1
• getopt 1.20.3
• GetoptLong 0.1.7
• GGally 1.4.0
• ggbeeswarm 0.6.0
• ggforce 0.2.2
• ggm 2.3
• ggplot2 3.1.1
• ggraph 1.0.2
• ggrepel 0.8.1
• ggridges 0.5.1
• ggvis 0.4.4
• gh 1.0.1
• GillespieSSA-0.5-4
• git2r 0.25.2
• glasso 1.10
• gllvm 1.1.3
• glmmML 1.1.0
• glmmTMB 0.2.3
• glmnet-2.0-18
• GlobalOptions 0.1.0
• globals 0.12.4
• glue 1.3.1
• gmm-1.6-2
• gmodels 2.18.1
• goftest-1.1-1
• gomms 1.0
• gower 0.2.1
• gplots 3.0.1.1
• gridBase-0.4-7
• gridExtra 2.3
• grpreg-3.2-1
• GSA 1.03.1
• gsalib 2.1
• gsw-1.0-5
• gtable 0.3.0
• gtools 3.8.1
• GUTS 1.1.0
• h2o 3.22.1.1
• haven 2.1.0
• hdf5r 1.2.0
• heatmap3 1.1.6
• hexbin 1.27.3
• highr 0.8
• Hmisc-4.2-0
• hms 0.4.2
• htmlTable 1.13.1
• htmltools 0.3.6
• htmlwidgets 1.3
• httpcode 0.2.0
• httpuv 1.5.1
• httr 1.4.0
• huge 1.3.2
• hwriter 1.3.2
• HWxtest 1.1.9
• ica-1.0-2
• IDPmisc 1.1.19
• igraph 1.2.4.1
• imager 0.41.2
• ineq-0.2-13
• influenceR 0.1.0
• infotheo 1.2.0
• ini 0.3.1
• interpretR 0.2.4
• inum-1.0-1
• ipred-0.9-9
• irace 3.3
• irlba 2.3.3
• Iso-0.0-18
• iterators 1.0.10
• itertools-0.1-3
• JBTools 0.7.2.9
• jomo-2.6-8
• jpeg-0.1-8
• jsonlite 1.6
• kernlab-0.9-27
• KernSmooth-2.23-15
• klaR-0.6-14
• knitr 1.23
• KODAMA 1.5
• kohonen 3.0.8
• ks 1.11.5
• labdsv-1.8-0
• labeling 0.3
• labelled 2.2.1
• laeken 0.5.0
• lambda.r 1.2.3
• lars 1.2
• later 0.8.0
• lattice-0.20-38
• latticeExtra-0.6-28
• lava 1.6.5
• lavaan-0.6-3
• lazy-1.2-16
• lazyeval 0.2.2
• leaps 3.0
• LearnBayes 2.15.1
• lhs 1.0.1
• libcoin-1.0-4
• limSolve 1.5.5.3
• listenv 0.7.0
• lme4-1.1-21
• Lmoments-1.3-1
• lmtest-0.9-37
• locfdr-1.1-8
• locfit-1.5-9.1
• logcondens 2.1.5
• logistf 1.23
• logspline 2.1.12
• longitudinal 1.1.12
• longmemo-1.1-1
• lpSolve 5.6.13.1
• lqa-1.0-3
• lsei-1.2-0
• lubridate 1.7.4
• m e
• magic-1.5-9
• magick 2.0
• magrittr 1.5
• manipulateWidget 0.10.0
• maps 3.3.0
• maptools-0.9-5
• markdown 0.9
• MASS-7.3-51.4
• Matching-4.9-6
• MatchIt 3.0.2
• Matrix-1.2-17
• matrixcalc-1.0-3
• MatrixModels-0.4-1
• matrixStats 0.54.0
• maxLik-1.3-6
• mboost-2.9-1
• mclust 5.4.3
• mcmc-0.9-6
• MCMCpack-1.4-4
• mediation 4.4.7
• memoise 1.1.0
• memuse-4.0-0
• metap 1.1
• mgcv-1.8-28
• mi 1.0
• mice 3.5.0
• mime 0.6
• miniUI 0.1.1.1
• minpack.lm-1.2-1
• minqa 1.2.4
• misc3d-0.8-4
• miscTools-0.6-22
• missForest 1.4
• mitml-0.3-7
• mixtools 1.1.0
• mlbench-2.1-1
• mlegp 3.1.7
• mlogit-0.4-2
• mlr 2.14.0
• mltools 0.3.5
• mnormt-1.5-5
• ModelMetrics 1.2.2
• modelr 0.1.4
• modeltools-0.2-22
• moments 0.14
• mpath-0.3-15
• msm 1.6.7
• multcomp-1.4-10
• multicool-0.1-10
• munsell 0.5.0
• mvabund 4.0.1
• mvtnorm-1.0-10
• natserv 0.3.0
• ncbit 2013.03.29
• network 1.15
• networkDynamic 0.10.0
• neuRosim-0.2-12
• nleqslv 3.3.2
• nlme-3.1-140
• nloptr 1.2.1
• NLP-0.2-0
• NMF 0.21.0
• nnet-7.3-12
• nnls 1.4
• nor1mix-1.2-3
• np-0.60-9
• npsurv-0.4-0
• numDeriv-2016.8-1.1
• oce-1.0-1
• OceanView 1.0.4
• oddsratio 1.0.3
• openssl 1.4
• openxlsx 4.1.0.1
• optmatch-0.9-10
• optparse 1.6.2
• ordinal-2019.4-25
• pan 1.6
• parallelMap 1.4
• ParamHelpers 1.12
• parsedate 1.2.0
• party-1.3-3
• partykit-1.2-4
• pastecs 1.3.21
• pbapply-1.4-0
• pbivnorm 0.6.0
• pbkrtest-0.4-7
• pcaPP-1.9-73
• penalized-0.9-51
• peperr-1.1-7.1
• permute-0.9-5
• phangorn 2.5.3
• pheatmap 1.0.12
• phylobase 0.8.6
• pillar 1.4.1
• pim 2.0.1
• pinfsc50 1.1.0
• pixmap-0.4-11
• pkgbuild 1.0.3
• pkgconfig 2.0.2
• pkgload 1.0.2
• pkgmaker 0.27
• plogr 0.2.0
• plot3D 1.1.1
• plot3Drgl 1.0.1
• plotly 4.9.0
• plotrix-3.7-5
• pls-2.7-1
• plyr 1.8.4
• png-0.1-7
• PoissonSeq 1.1.2
• polspline 1.1.14
• polyclip-1.10-0
• polynom-1.4-0
• prabclus-2.3-1
• pracma 2.2.5
• praise 1.0.0
• PresenceAbsence 1.1.9
• prettyunits 1.0.2
• pROC 1.15.0
• processx 3.3.1
• prodlim 2018.04.18
• profileModel 0.6.0
• progress 1.2.2
• promises 1.0.1
• proto 1.0.0
• proxy-0.4-23
• pryr 0.1.4
• ps 1.3.0
• pscl 1.5.2
• pspline-1.0-18
• psych 1.8.12
• pulsar 0.3.5
• purrr 0.3.2
• pvclust-2.0-0
• qgraph 1.6.2
• qrnn 2.0.3
• quadprog-1.5-7
• quantmod-0.4-14
• quantreg 5.40
• questionr 0.7.0
• R.cache 0.13.0
• R.matlab 3.6.2
• R.methodsS3 1.7.1
• R.oo 1.22.0
• R.rsp 0.43.1
• R.utils 2.8.0
• R6 2.4.0
• randomForest-4.6-14
• randomForestSRC 2.9.0
• ranger 0.11.2
• RANN 2.6.1
• raster-2.9-5
• RCircos 1.2.1
• rcmdcheck 1.3.3
• RColorBrewer-1.1-2
• Rcpp 1.0.1
• RcppArmadillo 0.9.400.3.0
• RcppEigen 0.3.3.5.0
• RcppGSL 0.3.6
• RcppProgress 0.4.1
• RcppRoll 0.3.0
• RCurl-1.95-4.12
• Rdpack-0.11-0
• readbitmap 0.1.5
• readr 1.3.1
• readxl 1.3.1
• recipes 0.1.5
• registry-0.5-1
• rematch 1.0.1
• rematch2 2.0.1
• remotes 2.0.4
• rentrez 1.2.2
• reprex 0.3.0
• reshape 0.8.8
• reshape2 1.4.3
• reticulate 1.12
• RGCCA 2.1.2
• rgexf 0.15.3
• rgl 0.100.19
• RInside 0.2.15
• rio 0.5.16
• ritis 0.7.6
• RItools-0.1-16.1
• rJava-0.9-11
• rjson 0.2.20
• RJSONIO-1.3-1.2
• rlang 0.3.4
• rlecuyer-0.3-4
• rmarkdown 1.13
• rmeta 3.0
• Rmpi-0.6-9
• rms-5.1-3.1
• RMTstat 0.3
• rncl 0.8.3
• RNeXML 2.3.0
• rngtools 1.3.1.1
• robustbase-0.93-5
• ROCR-1.0-7
• Rook-1.1-1
• rootSolve 1.7
• rotl 3.0.7
• roxygen2 6.1.1
• rpart-4.1-15
• rprojroot-1.3-2
• rrcov-1.4-7
• rredlist 0.5.0
• RSNNS-0.4-11
• RSQLite 2.1.1
• Rssa 1.0
• rstudioapi 0.10
• Rtsne 0.15
• Rttf2pt1 1.3.7
• RUnit 0.4.32
• rversions 2.0.0
• rvest 0.3.4
• RWeka-0.4-40
• RWekajars-3.9.3-1
• s p
• s t
• s t
• sandwich-2.5-1
• scales 1.0.0
• scatterplot3d-0.3-41
• SDMTools-1.1-221.1
• seewave 2.1.3
• segmented-0.5-4.0
• selectr-0.4-1
• sem-3.1-9
• sendmailR-1.2-1
• seqinr-3.4-5
• sessioninfo 1.1.1
• sfsmisc-1.1-4
• shape 1.4.4
• shapefiles 0.7
• shiny 1.3.2
• shinydashboard 0.7.1
• shinythemes 1.1.2
• signal-0.7-6
• SimSeq 1.4.0
• SKAT 1.3.2.1
• slam-0.1-45
• sm-2.2-5.6
• smoother 1.1
• sn-1.5-4
• sna 2.4
• snow-0.4-3
• snowfall-1.84-6.1
• solrium 1.0.2
• som-0.3-5.1
• soundecology 1.3.3
• sourcetools 0.1.7
• sp-1.3-1
• spam-2.2-2
• spaMM 2.7.1
• SparseM 1.77
• spatial-7.3-11
• spatstat-1.59-0
• spatstat.data-1.4-0
• spatstat.utils-1.13-0
• spData 0.3.0
• SQUAREM-2017.10-1
• stabledist-0.7-1
• stabs-0.6-3
• startupmsg 0.9.6
• statmod 1.4.32
• statnet 2018.10
• statnet.common 4.3.0
• stringi 1.4.3
• stringr 1.4.0
• strucchange-1.5-1
• subplex-1.5-4
• SuperLearner-2.0-24
• SuppDists-1.1-9.4
• survival-2.44-1.1
• survivalROC 1.0.3
• svd 0.4.3
• sys 3.2
• t o
• taxize 0.9.7
• tclust-1.4-1
• TeachingDemos 2.10
• tensor 1.5
• tensorA 0.36.1
• tergm 3.6.0
• testthat 2.1.1
• TH.data-1.0-10
• tibble 2.1.3
• tidygraph 1.1.2
• tidyr 0.8.3
• tidyselect 0.2.5
• tidyverse 1.2.1
• tiff-0.1-5
• timeDate 3043.102
• timereg 1.9.3
• tinytex 0.13
• tkrplot-0.0-24
• tm-0.7-6
• TMB 1.7.15
• tmvtnorm-1.4-10
• TraMineR-2.0-11.1
• tree-1.0-40
• triebeard 0.3.0
• trimcluster-0.1-2.1
• tripack-1.3-8
• trust-0.1-7
• tseries-0.10-47
• tseriesChaos-0.1-13.1
• tsna 0.3.0
• tsne-0.1-3
• TTR-0.23-4
• tuneR 1.3.3
• tweedie 2.3.2
• tweenr 1.0.1
• u t
• ucminf-1.1-4
• unbalanced 2.0
• uniqueAtomMat-0.1-3-2
• units-0.6-3
• urca-1.3-0
• urltools 1.7.3
• uroot-2.0-9.1
• usethis 1.5.0
• utf8 1.1.4
• uuid-0.1-2
• vcd-1.4-4
• vcfR 1.8.0
• vctrs 0.1.0
• vegan-2.5-5
• VennDiagram 1.6.20
• VGAM-1.1-1
• VIM 4.8.0
• vioplot 0.3.0
• vipor 0.4.5
• viridis 0.5.1
• viridisLite 0.3.0
• visNetwork 2.0.6
• waveslim 1.7.5.1
• webshot 0.5.1
• whisker-0.3-2
• WikidataR 1.4.0
• WikipediR 1.5.0
• wikitaxa 0.3.0
• withr 2.1.2
• worrms 0.3.2
• WriteXLS 4.1.0
• xfun 0.7
• xlsx 0.6.1
• xlsxjars 0.6.1
• XML-3.98-1.19
• xml2 1.2.0
• xopen 1.0.0
• xtable-1.8-4
• xts-0.11-2
• yaml 2.2.0
• zeallot 0.1.0
• zip 2.0.2
• zoo-1.8-5

More Information

For more information visit the R website.

Dependencies

This version of R has a direct dependency on: bzip2/1.0.6-GCCcore-8.2.0 cairo/1.16.0-GCCcore-8.2.0 cURL/7.63.0-GCCcore-8.2.0 FFTW/3.3.8-gompi-2019a foss/2019a GMP/6.1.2-GCCcore-8.2.0 GSL/2.5-GCC-8.2.0-2.31.1 HDF5/1.10.5-gompi-2019a ICU/64.2-GCCcore-8.2.0 ImageMagick/7.0.8-46-GCCcore-8.2.0 Java/11 libGLU/9.0.0-GCCcore-8.2.0 libjpeg-turbo/2.0.2-GCCcore-8.2.0 libpng/1.6.36-GCCcore-8.2.0 libreadline/8.0-GCCcore-8.2.0 libsndfile/1.0.28-GCCcore-8.2.0 LibTIFF/4.0.10-GCCcore-8.2.0 libxml2/2.9.8-GCCcore-8.2.0 Mesa/19.0.1-GCCcore-8.2.0 ncurses/6.1-GCCcore-8.2.0 NLopt/2.6.1-GCCcore-8.2.0 PCRE/8.43-GCCcore-8.2.0 SQLite/3.27.2-GCCcore-8.2.0 Tk/8.6.9-GCCcore-8.2.0 UDUNITS/2.2.26-GCCcore-8.2.0 X11/20190311-GCCcore-8.2.0 XZ/5.2.4-GCCcore-8.2.0 zlib/1.2.11-GCCcore-8.2.0

Required By

This version of R is a direct dependent of: AFNI/18.3.00-foss-2019a-Python-3.7.2 CODEX2/20191031-foss-2019a-R-3.6.0 conumee/1.18.0-foss-2019a-R-3.6.0 dbscan/1.1-5-foss-2019a-R-3.6.0 DeepMod/0.1.1-foss-2019a-Python-3.7.2 destiny/2.14.0-foss-2019a-R-3.6.0 DPClust/2.2.8-foss-2019a-R-3.6.0 gridGraphics/0.4-1-foss-2019a-R-3.6.0 karyoploteR/1.10.5-foss-2019a-R-3.6.0 landscapemetrics/1.2.1-foss-2019a-R-3.6.0 landscapemetrics/1.3-foss-2019a-R-3.6.0 MAST/1.10.0-foss-2019a-R-3.6.0 NbClust/3.0-foss-2019a-R-3.6.0 ncdf4/1.16.1-foss-2019a-R-3.6.0 profvis/0.3.6-foss-2019a-R-3.6.0 QDNAseq/1.20.0-foss-2019a-R-3.6.0 qqman/0.1.4-foss-2019a-R-3.6.0 R-bundle-Bioconductor/3.9-foss-2019a-R-3.6.0 rgdal/1.4-4-foss-2019a-R-3.6.0 rpy2/2.8.2-foss-2019a-Python-3.7.2 SAIGE/0.35.8.8-foss-2019a-R-3.6.0 Seurat/3.1.1-foss-2019a-R-3.6.0 spant/0.18.0-foss-2019a-R-3.6.0 spant/0.19.0-foss-2019a-R-3.6.0 TwoSampleMR/0.4.25-foss-2019a-R-3.6.0 WGCNA/1.69-foss-2019a-R-3.6.0

Other Versions

These versions of R are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 17th July 2019