R 3.5.1-foss-2018b

Deprecated: Use of this version of R is deprecated. More information on our Applications Support and Retention Policy.

There is a newer install of R

R is a free software environment for statistical computing and graphics.

Accessing R 3.5.1-foss-2018b

To load the module for R 3.5.1-foss-2018b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load R/3.5.1-foss-2018b

BEAR Apps Version

2018b

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Plotting in R and X11 Errors

If you receive an error message unable to open connection to X11 display when generating plots then you should either:

• add options(bitmapType='cairo') before plotting
• or change the plot command to include type="cairo"

Extensions

• abc 2.1
• abc.data 1.0
• abind-1.4-5
• acepack 1.4.1
• adabag 4.2
• ade4-1.7-11
• adegenet 2.1.1
• adephylo-1.1-11
• ADGofTest 0.3
• aggregation 1.0.1
• akima-0.6-2
• AlgDesign-1.1-7.3
• animation 2.5
• aod 1.3
• ape 5.1
• arm-1.10-1
• assertthat 0.2.0
• AUC 0.3.0
• audio-0.1-5.1
• b a
• backports 1.1.2
• base64 2.0
• base64enc-0.1-3
• BatchJobs 1.7
• BayesianTools 0.1.5
• bayesm-3.1-0.1
• BB-2014.10-1
• BBmisc 1.11
• BDgraph 2.51
• beanplot 1.2
• beeswarm 0.2.3
• BH-1.66.0-1
• BiasedUrn 1.07
• bibtex 0.4.2
• bibtex 0.4.2
• bigmemory 4.5.33
• bigmemory.sri 0.1.3
• bindr 0.1.1
• bindrcpp 0.2.2
• bio3d-2.3-4
• biom 0.3.12
• bit-1.1-14
• bit64-0.9-7
• bitops-1.0-6
• blob 1.1.1
• bmp 0.3
• bnlearn 4.3
• bold 0.5.0
• boot-1.3-20
• bootstrap 2017.2
• brew-1.0-6
• brglm 0.6.1
• bridgedist 0.1.0
• bridgesampling-0.4-0
• Brobdingnag-1.2-6
• broom 0.5.0
• bst-0.3-15
• Cairo-1.5-9
• calibrate 1.7.2
• callr 2.0.4
• car-3.0-0
• carData-3.0-1
• caret-6.0-80
• caTools 1.17.1.1
• cellranger 1.1.0
• cgdsr 1.2.10
• cghFLasso-0.2-1
• checkmate 1.8.5
• chemometrics 1.4.2
• chron-2.3-52
• circlize 0.4.4
• class-7.3-14
• classInt-0.2-3
• cli 1.0.0
• clipr 0.4.1
• cluster-2.0.7-1
• clusterGeneration 1.3.4
• clusterRepro-0.5-1.1
• clustree 0.2.2
• clValid-0.6-6
• coda-0.19-1
• codetools-0.2-15
• coin-1.2-2
• colorspace-1.3-2
• combinat-0.0-8
• ComICS 1.0.4
• commonmark 1.5
• compositions-1.40-2
• corpcor 1.6.9
• cowplot 0.9.3
• crayon 1.3.4
• crosstalk 1.0.0
• crul 0.6.0
• csSAM 1.2.4
• cubature 1.4
• curl 3.2
• cvAUC 1.1.0
• CVST-0.2-2
• d a
• d3Network 0.5.2.1
• data.table 1.11.4
• DBI 1.0.0
• dbplyr 1.2.2
• ddalpha 1.3.4
• deal-1.2-37
• debugme 1.1.0
• deldir-0.1-15
• dendextend 1.8.0
• DEoptimR-1.0-8
• Deriv 3.8.5
• desc 1.2.0
• deSolve 1.21
• devtools 1.13.6
• DHARMa 0.2.0
• diagram 1.6.4
• DiagrammeR 1.0.0
• dichromat-2.0-0
• digest 0.6.15
• dimRed 0.1.0
• diptest-0.75-7
• DiscriMiner-0.1-29
• dismo-1.1-4
• distillery-1.0-4
• distr 2.7.0
• distrEx 2.7.0
• DistributionUtils-0.5-1
• diveRsity 1.9.90
• doMC 1.3.5
• doParallel 1.0.11
• doRNG 1.7.1
• doSNOW 1.0.16
• dotCall64-1.0-0
• downloader 0.4
• dplyr 0.7.6
• DRR 0.0.3
• DT 0.4
• dtangle 0.3.1
• DTRreg 1.3
• dtw-1.20-1
• dummies 1.5.6
• dynamicTreeCut-1.63-1
• e1071-1.7-0
• EasyABC 1.5
• ellipse 0.4.1
• emulator-1.2-17
• energy-1.7-5
• ergm 3.9.4
• ergm.count 3.3.0
• evaluate 0.11
• expm-0.999-2
• expsmooth 2.3
• extrafont 0.17
• extrafontdb 1.0
• extRemes-2.0-9
• FactoMineR 1.41
• fail 1.3
• fansi 0.3.0
• fastcluster 1.1.25
• fastICA-1.2-1
• fastmatch-1.1-0
• fdrtool 1.2.15
• feather 0.3.1
• ff-2.2-14
• ffbase 0.12.3
• fftw-1.0-4
• fields 9.6
• filehash-2.4-1
• fishMod 0.29
• fitdistrplus-1.0-11
• flashClust-1.01-2
• flexclust-1.3-5
• flexmix-2.3-14
• fma 2.3
• FME 1.3.5
• FNN 1.1.2.1
• forcats 0.3.0
• foreach 1.4.4
• forecast 8.4
• foreign-0.8-71
• formatR 1.5
• Formula-1.2-3
• fossil 0.3.7
• fpc-2.1-11.1
• fpp 0.5
• fracdiff-1.4-2
• futile.logger 1.4.3
• futile.options 1.0.1
• future 1.9.0
• g r
• g r
• g r
• gam 1.16
• gamlss-5.1-2
• gamlss.data-5.0-1
• gamlss.dist-5.0-6
• gamlss.tr-5.1-0
• gap-1.1-22
• gapfill 0.9.6
• gbm 2.1.3
• gbRd-0.4-11
• gclus 1.3.1
• gdalUtils 2.0.1.14
• gdata 2.18.0
• gdistance-1.2-2
• gee-4.13-19
• geepack-1.2-1
• geiger 2.0.6
• GeneNet 1.2.13
• geometry-0.3-6
• getopt 1.20.2
• GetoptLong 0.1.7
• GGally 1.4.0
• ggbeeswarm 0.6.0
• ggforce 0.1.3
• ggm 2.3
• ggplot2 3.0.0
• ggraph 1.0.2
• ggrepel 0.8.0
• ggridges 0.5.0
• ggvis 0.4.3
• GillespieSSA-0.5-4
• git2r 0.23.0
• glasso 1.10
• gllvm 1.0
• glmmML 1.0.3
• glmmTMB 0.2.2.0
• glmnet-2.0-16
• GlobalOptions 0.1.0
• globals 0.12.1
• glue 1.3.0
• gmm-1.6-2
• gmodels 2.18.1
• goftest-1.1-1
• gomms 1.0
• gower 0.1.2
• gplots 3.0.1
• gridBase-0.4-7
• gridExtra 2.3
• grpreg-3.2-0
• GSA 1.03
• gsalib 2.1
• gsw-1.0-5
• gtable 0.2.0
• gtools 3.8.1
• haven 1.1.2
• hdf5r 1.0.0
• heatmap3 1.1.1
• hexbin 1.27.2
• highr 0.7
• Hmisc-4.1-1
• hms 0.4.2
• htmlTable 1.12
• htmltools 0.3.6
• htmlwidgets 1.2
• httpcode 0.2.0
• httpuv 1.4.5
• httr 1.3.1
• huge 1.2.7
• hwriter 1.3.2
• HWxtest 1.1.7
• ica-1.0-2
• IDPmisc 1.1.17
• igraph 1.2.2
• imager 0.41.1
• ineq-0.2-13
• influenceR 0.1.0
• infotheo 1.2.0
• interpretR 0.2.4
• inum-1.0-0
• ipred-0.9-7
• irace 3.1
• irlba 2.3.2
• Iso-0.0-17
• iterators 1.0.10
• JBTools 0.7.2.9
• jomo-2.6-3
• jpeg-0.1-8
• jsonlite 1.5
• kernlab-0.9-27
• KernSmooth-2.23-15
• klaR-0.6-14
• knitr 1.20
• KODAMA 1.4
• kohonen 3.0.6
• ks 1.11.3
• labdsv-1.8-0
• labeling 0.3
• labelled 1.1.0
• laeken 0.4.6
• lambda.r 1.2.3
• lars 1.2
• later 0.7.3
• later 0.7.4
• lattice-0.20-35
• latticeExtra-0.6-28
• lava 1.6.3
• lavaan-0.6-2
• lazy-1.2-16
• lazyeval 0.2.1
• leaps 3.0
• LearnBayes 2.15.1
• lhs 0.16
• libcoin-1.0-1
• limSolve 1.5.5.3
• listenv 0.7.0
• lme4-1.1-18-1
• Lmoments-1.2-3
• lmtest-0.9-36
• locfdr-1.1-8
• locfit-1.5-9.1
• logcondens 2.1.5
• logistf 1.23
• logspline 2.1.11
• longitudinal 1.1.12
• longmemo-1.0-0
• lpSolve 5.6.13
• lsei-1.2-0
• lubridate 1.7.4
• m e
• magic-1.5-8
• magrittr 1.5
• manipulateWidget 0.10.0
• maps 3.3.0
• maptools-0.9-3
• markdown 0.8
• MASS-7.3-50
• Matching-4.9-3
• MatchIt 3.0.2
• Matrix-1.2-14
• matrixcalc-1.0-3
• MatrixModels-0.4-1
• matrixStats 0.54.0
• maxLik-1.3-4
• mboost-2.9-0
• mclust 5.4.1
• mcmc-0.9-5
• MCMCpack-1.4-4
• mediation 4.4.6
• memoise 1.1.0
• memuse-4.0-0
• metap 1.0
• mgcv-1.8-24
• mi 1.0
• mice 3.3.0
• mime 0.5
• miniUI 0.1.1.1
• minpack.lm-1.2-1
• minqa 1.2.4
• misc3d-0.8-4
• miscTools-0.6-22
• mitml-0.3-6
• mixtools 1.1.0
• mlbench-2.1-1
• mlogit-0.3-0
• mlr 2.12.1
• mnormt-1.5-5
• ModelMetrics 1.2.0
• modelr 0.1.2
• modeltools-0.2-22
• moments 0.14
• mpath-0.3-5
• msm 1.6.6
• multcomp-1.4-8
• multicool-0.1-10
• munsell 0.5.0
• mvabund 3.13.1
• mvtnorm-1.0-8
• natserv 0.1.4
• ncbit 2013.03.29
• network 1.13.0.1
• networkDynamic 0.9.0
• neuRosim-0.2-12
• nleqslv 3.3.2
• nlme-3.1-137
• nloptr 1.0.4
• NLP-0.1-11
• NMF 0.21.0
• NMF 0.21.0
• nnet-7.3-12
• nnls 1.4
• nor1mix-1.2-3
• np-0.60-8
• npsurv-0.4-0
• numDeriv-2016.8-1
• oce-0.9-23
• OceanView 1.0.4
• openssl 1.0.2
• openxlsx 4.1.0
• optmatch-0.9-10
• optparse 1.6.0
• ordinal-2018.4-19
• pan 1.6
• parallelMap 1.3
• ParamHelpers 1.11
• party-1.3-1
• partykit-1.2-2
• pastecs 1.3.21
• pbapply-1.3-4
• pbivnorm 0.6.0
• pbkrtest-0.4-7
• pcaPP-1.9-73
• penalized-0.9-51
• peperr-1.1-7
• permute-0.9-4
• phangorn 2.4.0
• pheatmap 1.0.10
• phylobase 0.8.4
• pillar 1.3.0
• pim 2.0.1
• pinfsc50 1.1.0
• pixmap-0.4-11
• pkgbuild 1.0.0
• pkgconfig 2.0.2
• pkgload 1.0.0
• pkgmaker 0.27
• plogr 0.2.0
• plot3D 1.1.1
• plot3Drgl 1.0.1
• plotly 4.8.0
• plotrix-3.7-2
• pls-2.6-0
• plyr 1.8.4
• png-0.1-7
• PoissonSeq 1.1.2
• polspline 1.1.13
• polyclip-1.9-1
• polynom-1.3-9
• prabclus-2.2-6
• pracma 2.1.4
• praise 1.0.0
• prettyunits 1.0.2
• pROC 1.12.1
• processx 3.2.0
• prodlim 2018.04.18
• profileModel-0.5-9
• progress 1.2.0
• promises 1.0.1
• promises 1.0.1
• proto 1.0.0
• proxy-0.4-22
• pryr 0.1.4
• ps 1.1.0
• pscl 1.5.2
• pspline-1.0-18
• psych 1.8.4
• pulsar 0.3.4
• purrr 0.2.5
• pvclust-2.0-0
• qgraph 1.5
• qrnn 2.0.3
• quadprog-1.5-5
• quantmod-0.4-13
• quantreg 5.36
• questionr 0.6.3
• R.cache 0.13.0
• R.matlab 3.6.1
• R.methodsS3 1.7.1
• R.oo 1.22.0
• R.rsp 0.42.0
• R.utils 2.6.0
• R6 2.2.2
• randomForest-4.6-14
• randomForestSRC 2.7.0
• ranger 0.10.1
• RANN 2.6
• raster-2.6-7
• RCircos 1.2.0
• RColorBrewer-1.1-2
• Rcpp 0.12.18
• RcppArmadillo 0.9.100.5.0
• RcppEigen 0.3.3.4.0
• RcppGSL 0.3.6
• RcppProgress 0.4.1
• RcppRoll 0.3.0
• RCurl-1.95-4.11
• Rdpack-0.9-0
• readbitmap 0.1.5
• readr 1.1.1
• readxl 1.1.0
• recipes 0.1.3
• registry 0.5
• rematch 1.0.1
• rentrez 1.2.1
• reprex 0.2.0
• reshape 0.8.7
• reshape2 1.4.3
• reticulate 1.10
• RGCCA 2.1.2
• rgdal-1.3-4
• rgexf 0.15.3
• rgl 0.99.16
• RInside 0.2.14
• rio 0.5.10
• ritis 0.7.2
• RItools-0.1-16
• rJava-0.9-10
• rjson 0.2.20
• RJSONIO-1.3-0
• rlang 0.2.2
• rlecuyer-0.3-4
• rmarkdown 1.10
• rmeta 3.0
• Rmpi-0.6-7
• rms-5.1-2
• RMTstat 0.3
• rncl 0.8.3
• RNeXML 2.1.2
• rngtools 1.3.1
• robustbase-0.93-2
• ROCR-1.0-7
• Rook-1.1-1
• rootSolve 1.7
• rotl 3.0.4
• roxygen2 6.1.0
• rpart-4.1-13
• rprojroot-1.3-2
• rrcov-1.4-4
• rredlist 0.5.0
• RSNNS-0.4-11
• RSQLite 2.1.1
• Rssa 1.0
• rstudioapi 0.7
• Rtsne 0.13
• Rttf2pt1 1.3.7
• RUnit 0.4.32
• rversions 1.0.3
• rvest 0.3.2
• RWeka-0.4-38
• RWekajars-3.9.2-1
• s p
• s t
• s t
• sandwich-2.5-0
• scales 1.0.0
• scatterplot3d-0.3-41
• SDMTools-1.1-221
• seewave 2.1.0
• segmented-0.5-3.0
• selectr-0.4-1
• sem-3.1-9
• sendmailR-1.2-1
• seqinr-3.4-5
• sfsmisc-1.1-2
• shape 1.4.4
• shapefiles 0.7
• shiny 1.1.0
• shinydashboard 0.7.0
• shinythemes 1.1.2
• signal-0.7-6
• SimSeq 1.4.0
• SKAT 1.3.2.1
• slam-0.1-43
• sm-2.2-5.5
• smoother 1.1
• sn-1.5-2
• sna 2.4
• snow-0.4-2
• snowfall-1.84-6.1
• solrium 1.0.0
• som-0.3-5.1
• soundecology 1.3.3
• sourcetools 0.1.7
• sp-1.3-1
• spam-2.2-0
• SparseM 1.77
• spatial-7.3-11
• spatstat-1.56-1
• spatstat.data-1.3-1
• spatstat.utils-1.9-0
• spData 0.2.9.3
• spdep-0.7-8
• SQUAREM-2017.10-1
• stabledist-0.7-1
• stabs-0.6-3
• startupmsg 0.9.5
• statmod 1.4.30
• statnet 2018.10
• statnet.common 4.1.4
• stringi 1.2.4
• stringr 1.3.1
• strucchange-1.5-1
• subplex-1.5-4
• SuperLearner-2.0-24
• SuppDists-1.1-9.4
• survival-2.42-6
• survivalROC 1.0.3
• svd 0.4.1
• t o
• taxize 0.9.4
• tclust-1.4-1
• TeachingDemos 2.10
• tensor 1.5
• tensorA 0.36.1
• tergm 3.5.2
• testthat 2.0.0
• TH.data-1.0-9
• tibble 1.4.2
• tidygraph 1.1.0
• tidyr 0.8.1
• tidyselect 0.2.4
• tidyverse 1.2.1
• tiff-0.1-5
• timeDate 3043.102
• timereg 1.9.2
• tinytex 0.6
• tkrplot-0.0-24
• tm-0.7-5
• TMB 1.7.14
• tmvtnorm-1.4-10
• TraMineR-2.0-8
• tree-1.0-39
• triebeard 0.3.0
• trimcluster-0.1-2.1
• tripack-1.3-8
• trust-0.1-7
• tseries-0.10-45
• tseriesChaos-0.1-13
• tsna 0.2.0
• tsne-0.1-3
• TTR-0.23-3
• tuneR 1.3.3
• tweedie 2.3.2
• tweenr 0.1.5
• u t
• ucminf-1.1-4
• unbalanced 2.0
• uniqueAtomMat-0.1-3-2
• units-0.6-1
• urca-1.3-0
• urltools 1.7.1
• uroot-2.0-9
• utf8 1.1.4
• uuid-0.1-2
• vcd-1.4-4
• vcfR 1.8.0
• vegan-2.5-2
• VennDiagram 1.6.20
• VGAM-1.0-5
• VIM 4.7.0
• vioplot 0.2
• vipor 0.4.5
• viridis 0.5.1
• viridisLite 0.3.0
• visNetwork 2.0.4
• waveslim 1.7.5
• webshot 0.5.0
• whisker-0.3-2
• WikidataR 1.4.0
• WikipediR 1.5.0
• wikitaxa 0.2.0
• withr 2.1.2
• worrms 0.2.8
• WriteXLS 4.0.0
• xfun 0.3
• xlsx 0.6.1
• xlsxjars 0.6.1
• XML-3.98-1.15
• xml2 1.2.0
• xtable-1.8-2
• xts-0.11-0
• yaml 2.2.0
• zip 1.0.0
• zoo-1.8-3

More Information

For more information visit the R website.

Dependencies

This version of R has a direct dependency on: bzip2/1.0.6-GCCcore-7.3.0 cairo/1.14.12-GCCcore-7.3.0 cURL/7.60.0-GCCcore-7.3.0 FFTW/3.3.8-gompi-2018b foss/2018b GDAL/2.2.3-foss-2018b-Python-3.6.6 GMP/6.1.2-GCCcore-7.3.0 GSL/2.5-GCC-7.3.0-2.30 HDF5/1.10.2-foss-2018b ICU/61.1-GCCcore-7.3.0 Java/1.8 libGLU/9.0.0-foss-2018b libjpeg-turbo/2.0.0-GCCcore-7.3.0 libpng/1.6.34-GCCcore-7.3.0 libreadline/7.0-GCCcore-7.3.0 libsndfile/1.0.28-GCCcore-7.3.0 LibTIFF/4.0.9-GCCcore-7.3.0 libxml2/2.9.8-GCCcore-7.3.0 Mesa/18.1.1-foss-2018b ncurses/6.1-GCCcore-7.3.0 NLopt/2.4.2-GCCcore-7.3.0 PCRE/8.41-GCCcore-7.3.0 PROJ/5.0.0-foss-2018b SQLite/3.24.0-GCCcore-7.3.0 Tk/8.6.8-GCCcore-7.3.0 UDUNITS/2.2.26-foss-2018b X11/20180604-GCCcore-7.3.0 XZ/5.2.4-GCCcore-7.3.0 zlib/1.2.11-GCCcore-7.3.0

Required By

This version of R is a direct dependent of: brms/2.8.0-foss-2018b-R-3.5.1 C50/0.1.2-foss-2018b-R-3.5.1 clusterCrit/1.2.8-foss-2018b-R-3.5.1 dbscan/1.1-3-foss-2018b-R-3.5.1 DNMFilter/0.1.1-foss-2018b-R-3.5.1-Java-1.8 doFuture/0.8.0-foss-2018b-R-3.5.1 geosphere/1.5-7-foss-2018b-R-3.5.1 gfcanalysis/1.5.0-foss-2018b-R-3.5.1 ggpubr/0.2-foss-2018b-R-3.5.1 HGT-ID/1.0-foss-2018b-Java-1.8-Perl-5.28.0-R-3.5.1 IsoformSwitchAnalyzeR/1.2.0-foss-2018b-R-3.5.1 itsadug/2.3-foss-2018b-R-3.5.1 lmerTest/3.1-0-foss-2018b-R-3.5.1 lwgeom/0.1-6-foss-2018b-R-3.5.1 MAPIT/d0b348a-foss-2018b-R-3.5.1 MetaboliteDetector/3.2.20180913-foss-2018b-Linux NSM3/1.12-foss-2018b-R-3.5.1 openNLP/0.2-6-foss-2018b-R-3.5.1 PheWAS/0.12.2-2-foss-2018b-R-3.5.1 randomcoloR/1.1.0-foss-2018b-R-3.5.1 rasterVis/0.45-foss-2018b-R-3.5.1 R-bundle-Bioconductor/3.7-foss-2018b-R-3.5.1 RCIT/0.1.0-foss-2018b-R-3.5.1 rgeos/0.4-2-foss-2018b-R-3.5.1 rmweather/0.1.3-foss-2018b-R-3.5.1 rpy2/3.0.5-foss-2018b-Python-3.6.6 SciencesPo/1.4.1-foss-2018b-R-3.5.1 sjstats/0.17.4-foss-2018b-R-3.5.1 sleuth/0.30.0-foss-2018b-R-3.5.1 SnowballC/0.6.0-foss-2018b-R-3.5.1 splancs/2.01-40-foss-2018b-R-3.5.1 ssc/2.0.0-foss-2018b-R-3.5.1 svMisc/1.1.0-foss-2018b-R-3.5.1 TDA/1.6.5-foss-2018b-R-3.5.1 truncnorm/1.0-8-foss-2018b-R-3.5.1

Other Versions

These versions of R are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Last modified on 3rd June 2019