SciPy-bundle 2022.05-foss-2022a

There is a newer install of SciPy-bundle

Bundle of Python packages for scientific software

Accessing SciPy-bundle 2022.05-foss-2022a

To load the module for SciPy-bundle 2022.05-foss-2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load bear-apps/2022a module load SciPy-bundle/2022.05-foss-2022a

BEAR Apps Version

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

Extensions

beniget 0.4.1
Bottleneck 1.3.4
deap 1.3.1
gast 0.5.3
mpi4py 3.1.3
mpmath 1.2.1
numexpr 2.8.1
numpy 1.22.3
pandas 1.4.2
ply 3.11
pythran 0.11.0
scipy 1.8.1

More Information

For more information visit the SciPy-bundle website.

Dependencies

This version of SciPy-bundle has a direct dependency on: foss/2022a pybind11/2.9.2-GCCcore-11.3.0 Python/3.10.4-GCCcore-11.3.0

Required By

This version of SciPy-bundle is a direct dependent of: adjustText/0.7.3-foss-2022a AlphaFold/2.3.2-foss-2022a AlphaFold/2.3.1-foss-2022a AlphaFold/2.3.2-foss-2022a-CUDA-11.7.0 AlphaFold/2.3.1-foss-2022a-CUDA-11.7.0 Arrow/8.0.0-foss-2022a Arrow/8.0.0-foss-2022a-CUDA-11.7.0 BiobankRead-Bash/3.1.1-20190507-foss-2022a Biopython/1.79-foss-2022a BioServices/1.11.2-foss-2022a bokeh/2.4.3-foss-2022a cell2location/0.1.3-foss-2022a cell2location/0.1.3-foss-2022a-CUDA-11.7.0 CGmapTools/0.1.3-foss-2022a cma/3.3.0-foss-2022a dask/2022.12.0-foss-2022a dask/2022.10.0-foss-2022a deepTools/3.5.2-foss-2022a ETE/3.1.3-foss-2022a funannotate/1.8.17-foss-2022a GDAL/3.5.0-foss-2022a gensim/4.3.2-foss-2022a GOATOOLS/1.3.1-foss-2022a GROMACS/2023.3-foss-2022a GROMACS/2023.3-foss-2022a-CUDA-11.7.0 Gubbins/3.3.1-foss-2022a h5py/3.7.0-foss-2022a HDBSCAN/0.8.29-foss-2022a imageio/2.22.2-foss-2022a jax/0.3.25-foss-2022a-CUDA-11.7.0 jax/0.4.4-foss-2022a jax/0.4.4-foss-2022a-CUDA-11.7.0 jax/0.3.25-foss-2022a jax/0.3.23-foss-2022a jax/0.3.14-foss-2022a-CUDA-11.7.0 LABRAT/0.3.0-foss-2022a loompy/3.0.7-foss-2022a MACS2/2.2.9.1-foss-2022a mandrake/1.2.2-foss-2022a matplotlib/3.5.2-foss-2022a MNE-Python/1.3.1-foss-2022a mne-rsa/0.8-foss-2022a napari/0.4.17-foss-2022a netcdf4-python/1.6.1-foss-2022a networkx/2.8.4-foss-2022a NiBabel/4.0.2-foss-2022a NLTK/3.8-foss-2022a numba/0.56.4-foss-2022a numbakit-ode/0.5-foss-2022a ont-fast5-api/4.1.1-foss-2022a ont-remora/2.0.0-foss-2022a ont-remora/2.0.0-foss-2022a-CUDA-11.7.0 OpenCV/4.6.0-foss-2022a-contrib OpenCV/4.6.0-foss-2022a-CUDA-11.7.0-contrib OpenMDAO/3.29.0-foss-2022a OpenMM/8.0.0-foss-2022a OpenMM/7.7.0-foss-2022a OpenMM/8.0.0-foss-2022a-CUDA-11.7.0 OpenPose/1.7.0-foss-2022a-CUDA-11.7.0 panaroo/1.5.0-foss-2022a ParaView/5.10.1-foss-2022a-mpi pdal-python/3.2.3-foss-2022a PETSc/3.17.4-foss-2022a PLUMED/2.8.1-foss-2022a polars/0.17.12-foss-2022a poppunk/2.6.1-foss-2022a pp-sketchlib/2.1.1-foss-2022a ptwt/0.1.4.post2-foss-2022a ptwt/0.1.4.post2-foss-2022a-CUDA-11.7.0 pyBigWig/0.3.18-foss-2022a pyfasta/0.5.2-foss-2022a pyglotaran/0.7.2-foss-2022a pyseer/1.3.11-foss-2022a PyTables/3.8.0-foss-2022a python-parasail/1.3.3-foss-2022a PyTorch/1.12.1-foss-2022a-CUDA-11.7.0 PyTorch/1.12.1-foss-2022a PyTorch/2.0.1-foss-2022a-CUDA-11.7.0 pyvista/0.36.1-foss-2022a RagTag/2.1.0-foss-2022a RootPainter/0.2.27.0-foss-2022a-CUDA-11.7.0 scanpy/1.9.1-foss-2022a scArches/0.6.1-foss-2022a-CUDA-11.7.0 scArches/0.6.1-foss-2022a scikit-learn/1.1.2-foss-2022a scikit-misc/0.1.4-foss-2022a scvi-tools/0.20.1-foss-2022a-CUDA-11.7.0 scvi-tools/0.20.1-foss-2022a SHAP/0.41.0-foss-2022a Shapely/1.8.2-foss-2022a SignalP/6.0h-foss-2022a-fast spaCy/3.4.4-foss-2022a statsmodels/0.13.1-foss-2022a steinbock/0.16.1-foss-2022a sympy/1.11.1-foss-2022a sympy/1.10.1-foss-2022a tensorboardX/2.5.1-foss-2022a Transformers/4.24.0-foss-2022a-CUDA-11.7.0 Transformers/4.24.0-foss-2022a Trinity/2.15.1-foss-2022a umap-learn/0.5.3-foss-2022a VTK/9.2.2-foss-2022a WhatsHap/1.7-foss-2022a windspharm/1.7.0-foss-2022a xarray/2022.9.0-foss-2022a

Other Versions

These versions of SciPy-bundle are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
2023.07-gfbf-2023a	2023a
2023.02-gfbf-2022b	2022b
2022.05-intel-2022a	2022a
2021.10-foss-2021b	2021b
2021.05-iomkl-2021a	2021a
2021.05-foss-2021a	2021a
2020.11-iomkl-2020b	2020b
2020.11-fosscuda-2020b	2020b
2020.11-foss-2020b	2020b
2020.03-foss-2020a-Python-3.8.2	2020a
2020.03-foss-2020a-Python-2.7.18	2020a
2019.10-iomkl-2019b-Python-3.7.4	2019b
2019.10-foss-2019b-Python-3.7.4	2019b
2019.10-foss-2019b-Python-2.7.16	2019b
2019.03-foss-2019a	2019a

Last modified on 12th January 2023