foss 2022b
There is a newer install of foss
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.Accessing foss 2022b
To load the module for foss 2022b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2022b
module load foss/2022b
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the foss website.
Dependencies
This version of foss has a direct dependency on: FFTW/3.3.10-GCC-12.2.0 FFTW.MPI/3.3.10-gompi-2022b FlexiBLAS/3.2.1-GCC-12.2.0 GCC/12.2.0 OpenMPI/4.1.4-GCC-12.2.0 ScaLAPACK/2.2.0-gompi-2022b-fb
Required By
This version of foss is a direct dependent of: AdmixTools/7.0.2-foss-2022b-R-4.3.1-Perl-5.36.0 ALAMODE/1.4.2-foss-2022b ARAGORN/1.2.41-foss-2022b Armadillo/11.4.3-foss-2022b arpack-ng/3.8.0-foss-2022b arrow-R/11.0.0.3-foss-2022b-R-4.3.1 ASCAT/3.1.2-foss-2022b-R-4.3.1 AUGUSTUS/3.5.0-foss-2022b autograd/1.6.3-foss-2022b bakta/1.9.4-foss-2022b BAT/2.9.5-foss-2022b-R-4.3.1 Battenberg/2.2.9-foss-2022b-R-4.3.1 bcbio-gff/0.7.0-foss-2022b BEAR-Python-MSc-Bioinformatics/2022b-foss-2022b BEAR-R-bio/2022b-foss-2022b-R-4.3.1 biom-format/2.1.15-foss-2022b Biopython/1.81-foss-2022b BioServices/1.11.2-foss-2022b bokeh/3.2.1-foss-2022b BUSCO/5.4.7-foss-2022b CASTEP/24.1-foss-2022b Cbc/2.10.5-foss-2022b celldex/1.10.1-foss-2022b-R-4.3.1 Cellphy/0.9.2-foss-2022b Cgl/0.60.7-foss-2022b clinker/0.0.28-foss-2022b Clp/1.17.8-foss-2022b cma/3.3.0-foss-2022b CMSeq/1.0.4-foss-2022b coexist/0.3.2-foss-2022b dask/2023.7.1-foss-2022b dcm2bids/3.1.1-foss-2022b deal.II/9.5.1-foss-2022b deal.II/9.5.1-foss-2022b-muparser digitalDLSorteR/1.0.1-foss-2022b-R-4.3.1 eggnog-mapper/2.1.11-foss-2022b ELPA/2022.05.001-foss-2022b faahKO/1.40.0-foss-2022b-R-4.3.1 Fiona/1.9.2-foss-2022b flowTrans/1.52.0-foss-2022b-R-4.3.1 freebayes/1.3.8-foss-2022b-R-4.3.1 GDAL/3.6.2-foss-2022b Gdspy/1.6.13-foss-2022b geopandas/0.12.2-foss-2022b gffutils/0.12-foss-2022b ggfortify/0.4.16-foss-2022b-R-4.3.1 gprofiler-official/1.0.0-foss-2022b graphviz/0.20.1-foss-2022b h5py/3.8.0-foss-2022b Harminv/1.4.2-foss-2022b hdf5storage/0.1.19-foss-2022b hdWGCNA/20240201-foss-2022b-R-4.3.1 hmmlearn/0.3.0-foss-2022b Horovod/0.28.1-foss-2022b-CUDA-12.0.0-PyTorch-2.1.2 HPL/2.3-foss-2022b hypervolume/3.1.3-foss-2022b-R-4.3.1 Hypre/2.27.0-foss-2022b imageio/2.31.1-foss-2022b Infernal/1.1.4-foss-2022b iRF/3.0.0-foss-2022b-R-4.3.1 IRkernel/1.3.2-foss-2022b-R-4.3.1 kinbot/2.2.1-foss-2022b LAMMPS-MACE/20240201-foss-2022b-CUDA-12.0.0 Lethe/20230901-foss-2022b Lethe/20231028-foss-2022b MACS3/3.0.1-foss-2022b maftools/2.16.0-foss-2022b-R-4.3.1 magma/2.7.1-foss-2022b-CUDA-12.0.0 MAST/1.26.0-foss-2022b-R-4.3.1 Meep/1.28.0-foss-2022b MetaPhlAn/4.1.0-foss-2022b mgcv/1.9-1-foss-2022b-R-4.3.1 MNE-Python/1.6.1-foss-2022b MOFA2/1.10.0-foss-2022b-R-4.3.1 mofapy2/0.7.0-foss-2022b monocle/2.28.0-foss-2022b-R-4.3.1 MPB/1.11.1-foss-2022b msgpack/0.5.6-foss-2022b msPurity/1.26.0-foss-2022b-R-4.3.1 MSstats/4.8.6-foss-2022b-R-4.3.1 MUMPS/5.6.1-foss-2022b-metis mvlearn/0.5.0-foss-2022b netcdf4-python/1.6.3-foss-2022b NLopt/2.7.1-foss-2022b-Python NLTK/3.8.1-foss-2022b numba/0.58.1-foss-2022b occt/7.7.0-foss-2022b OpenCV/4.8.0-foss-2022b-contrib OpenFOAM (OpenCFD Ltd)/v2312-foss-2022b OpenMC/0.14.0-foss-2022b OpenMEEG/2.5.7-foss-2022b ottr/1.4.0-foss-2022b-R-4.3.1 p4est/2.3.6-foss-2022b pandaR/1.32.0-foss-2022b-R-4.3.1 ParaView/5.11.1-foss-2022b pept/0.5.1-foss-2022b PETSc/3.19.2-foss-2022b PhiSpy/4.2.21-foss-2022b PhyloPhlAn/3.0.3-foss-2022b phytools/2.0-3-foss-2022b-R-4.3.1 PICI-LIGGGHTS/3.8.1-foss-2022b Platypus-Opt/1.2.0-foss-2022b poilog/0.4.2-foss-2022b-R-4.3.1 polars/0.19.12-foss-2022b preCICE/2.5.0-foss-2022b preCICE-CalculiX/2.20-foss-2022b PuLP/2.7.0-foss-2022b pyfasta/0.5.2-foss-2022b PyTorch/2.1.2-foss-2022b PyTorch/2.1.2-foss-2022b-CUDA-12.0.0 PyTorch/1.13.1-foss-2022b PyTorch3D/0.7.5-foss-2022b-CUDA-12.0.0 PyTorch-Geometric/2.5.0-foss-2022b-PyTorch-2.1.2 PyTorch-Geometric/2.5.0-foss-2022b-PyTorch-2.1.2-CUDA-12.0.0 pyvis/0.3.1-foss-2022b pyvista/0.41.1-foss-2022b QML/0.4.0.27-foss-2022b QuantumESPRESSO/7.2-foss-2022b R/4.3.1-foss-2022b R-bundle-Bioconductor/3.17-foss-2022b-R-4.3.1 RDKit/2023.03.3-foss-2022b RSEM/1.3.3-foss-2022b RUVSeq/1.34.0-foss-2022b-R-4.3.1 scikit-image/0.21.0-foss-2022b scikit-plot/0.3.7-foss-2022b SDMtune/1.3.1-foss-2022b-R-4.3.1 Seaborn/0.12.2-foss-2022b SEPP/4.5.1-foss-2022b sequenza/3.0.0-foss-2022b sequenza-utils/3.0.0-foss-2022b Serialbox/2.6.1-foss-2022b Seurat/5.0.0-foss-2022b-R-4.3.1 Shapely/2.0.1-foss-2022b ShortStack/4.0.2-foss-2022b ShortTracks/1.1-foss-2022b SignalP/6.0h-foss-2022b-fast smotefamily/1.3.1-foss-2022b-R-4.3.1 snakemake/7.32.3-foss-2022b snakemake-wrapper-utils/0.6.2-foss-2022b strucVis/0.7-foss-2022b SuiteSparse/5.13.0-foss-2022b-METIS-5.1.0 SUNDIALS/6.6.0-foss-2022b SuperCollider/3.13.0-foss-2022b SuperLU_DIST/8.1.2-foss-2022b taxmyphage/0.2.7-foss-2022b TensorFlow/2.13.0-foss-2022b torchvision/0.16.0-foss-2022b-CUDA-12.0.0 Trilinos/14.4.0-foss-2022b Trinity/2.15.1-foss-2022b Trinotate/4.0.2-foss-2022b tRNAscan-SE/2.0.12-foss-2022b UMI-VarCal/2.8.2-foss-2022b vcflib/1.0.9-foss-2022b-R-4.3.1 vcfstats/0.6.0-foss-2022b ViennaRNA/2.6.4-foss-2022b VTK/9.2.6-foss-2022b wittgenstein/0.3.4-foss-2022b
Other Versions
These versions of foss are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
| Version | BEAR Apps Version |
|---|---|
| 2023a | 2023a |
| 2022a | 2022a |
| 2021b | 2021b |
| 2021a | 2021a |
| 2020b | 2020b |
| 2020a | 2020a |
| 2019b | 2019b |
| 2019a | 2019a |
| 2018b | 2018b |
Last modified on 14th July 2023