foss 2022a
There is a newer install of foss
GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.Accessing foss 2022a
To load the module for foss 2022a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2022a
module load foss/2022a
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
More Information
For more information visit the foss website.
Dependencies
This version of foss has a direct dependency on: FFTW/3.3.10-GCC-11.3.0 FFTW.MPI/3.3.10-gompi-2022a FlexiBLAS/3.2.0-GCC-11.3.0 GCC/11.3.0 OpenMPI/4.1.4-GCC-11.3.0 ScaLAPACK/2.2.0-gompi-2022a-fb
Required By
This version of foss is a direct dependent of: adjustText/0.7.3-foss-2022a AlphaFold/2.3.2-foss-2022a AlphaFold/2.3.1-foss-2022a-CUDA-11.7.0 AlphaFold/2.3.2-foss-2022a-CUDA-11.7.0 AlphaFold/2.3.1-foss-2022a AMBiT/3.1.1-foss-2022a ANTHRO/20230507-foss-2022a arpack-ng/3.8.0-foss-2022a Arrow/8.0.0-foss-2022a Arrow/8.0.0-foss-2022a-CUDA-11.7.0 arrow-R/8.0.0-foss-2022a-R-4.2.3 AUGUSTUS/3.5.0-foss-2022a BEAR-R-bio/2022a-foss-2022a-R-4.2.3 BiobankRead-Bash/3.1.1-20190507-foss-2022a Biopython/1.79-foss-2022a BioServices/1.11.2-foss-2022a bokeh/2.4.3-foss-2022a Cantera/2.6.0-foss-2022a cell2location/0.1.3-foss-2022a cell2location/0.1.3-foss-2022a-CUDA-11.7.0 Cellpose/2.2-foss-2022a Cellpose/2.2-foss-2022a-CUDA-11.7.0 CGmapTools/0.1.3-foss-2022a Clair3/1.0.4-foss-2022a cma/3.3.0-foss-2022a CodingQuarry/2.0-foss-2022a coexist/0.3.1-foss-2022a CP2K/2023.2-foss-2022a-CUDA-11.7.0 CP2K/2023.2-foss-2022a dask/2022.10.0-foss-2022a dask/2022.12.0-foss-2022a DeepLabCut/2.3.6-foss-2022a-CUDA-11.7.0 DeepLabCut/2.3.6-foss-2022a deepTools/3.5.2-foss-2022a DualSPHysics/5.0.233-foss-2022a DualSPHysics/5.0.233-foss-2022a-CUDA-11.7.0 eggnog-mapper/2.1.9-foss-2022a elasticnet/1.3-foss-2022a-R-4.2.3 ESMF/8.3.0-foss-2022a ETE/3.1.3-foss-2022a FDS/6.8.0-foss-2022a freebayes/1.3.7-foss-2022a-R-4.2.3 funannotate/1.8.17-foss-2022a fundiversity/1.1.1-foss-2022a-R-4.2.3 gap/4.12.2-foss-2022a GDAL/3.5.0-foss-2022a gensim/4.3.2-foss-2022a gffutils/0.12-foss-2022a GOATOOLS/1.3.1-foss-2022a graph-tool/2.55-foss-2022a GROMACS/2023.3-foss-2022a-CUDA-11.7.0 GROMACS/2023.3-foss-2022a Gubbins/3.3.1-foss-2022a GULP/6.2-foss-2022a h5py/3.7.0-foss-2022a HDBSCAN/0.8.29-foss-2022a Horovod/0.28.0-foss-2022a-CUDA-11.7.0-PyTorch-2.0.1 HPL/2.3-foss-2022a Hypre/2.25.0-foss-2022a igraph/0.10.3-foss-2022a imageio/2.22.2-foss-2022a imgaug/0.4.0-foss-2022a imgaug/0.4.0-foss-2022a-CUDA-11.7.0 Infernal/1.1.4-foss-2022a InterProScan/5.61-93.0-foss-2022a IRkernel/1.3.2-foss-2022a-R-4.2.3 jax/0.3.25-foss-2022a-CUDA-11.7.0 jax/0.4.4-foss-2022a-CUDA-11.7.0 jax/0.4.4-foss-2022a jax/0.3.14-foss-2022a-CUDA-11.7.0 jax/0.3.23-foss-2022a jax/0.3.25-foss-2022a LABRAT/0.3.0-foss-2022a leidenalg/0.9.1-foss-2022a Levenshtein/0.22.0-foss-2022a libleidenalg/0.11.1-foss-2022a loompy/3.0.7-foss-2022a MACS2/2.2.9.1-foss-2022a magma/2.6.2-foss-2022a-CUDA-11.7.0 mandrake/1.2.2-foss-2022a matplotlib/3.5.2-foss-2022a medaka/1.11.1-foss-2022a MESMER/7.0-foss-2022a MNE-Python/1.3.1-foss-2022a mne-rsa/0.8-foss-2022a MOOSE/2022-06-10-foss-2022a mozbc/20230507-foss-2022a MUMPS/5.5.1-foss-2022a-metis MUSEN/1.74.0-foss-2022a-CUDA-11.7.0 napari/0.4.17-foss-2022a natsort/8.2.0-foss-2022a netcdf4-python/1.6.1-foss-2022a networkx/2.8.4-foss-2022a NiBabel/4.0.2-foss-2022a NLTK/3.8-foss-2022a numba/0.56.4-foss-2022a numbakit-ode/0.5-foss-2022a ont-fast5-api/4.1.1-foss-2022a ont-remora/2.0.0-foss-2022a ont-remora/2.0.0-foss-2022a-CUDA-11.7.0 OpenCV/4.6.0-foss-2022a-CUDA-11.7.0-contrib OpenCV/4.6.0-foss-2022a-contrib OpenFOAM-Extend/5.0-20230821-foss-2022a OpenFOAM (The OpenFOAM Foundation)/10-foss-2022a-20230119 OpenFOAM (The OpenFOAM Foundation)/11-foss-2022a OpenLB/1.6-0-foss-2022a OpenMDAO/3.29.0-foss-2022a OpenMM/8.0.0-foss-2022a-CUDA-11.7.0 OpenMM/7.7.0-foss-2022a OpenMM/8.0.0-foss-2022a OpenPose/1.7.0-foss-2022a-CUDA-11.7.0 OpenSceneGraph/3.6.5-foss-2022a ORCA/5.0.4-foss-2022a-xtb-6.5.1 panaroo/1.5.0-foss-2022a ParaView/5.10.1-foss-2022a-mpi PASA/2.5.2-foss-2022a pblat/2.5.1-foss-2022a PDAL/2.5.5-foss-2022a pdal-python/3.2.3-foss-2022a PETSc/3.17.4-foss-2022a PICI-LIGGGHTS/3.8.1-foss-2022a-VTK-9.2.2 PLUMED/2.8.1-foss-2022a polars/0.17.12-foss-2022a poppunk/2.6.1-foss-2022a pp-sketchlib/2.1.1-foss-2022a ptwt/0.1.4.post2-foss-2022a-CUDA-11.7.0 ptwt/0.1.4.post2-foss-2022a pyBigWig/0.3.18-foss-2022a pyCycle/4.2.1-foss-2022a pyfasta/0.5.2-foss-2022a pyglotaran/0.7.2-foss-2022a pyperlin/1.1.0-foss-2022a-CUDA-11.7.0 pySCENIC/0.12.1-foss-2022a pyseer/1.3.11-foss-2022a PyTables/3.8.0-foss-2022a pytesseract/0.3.10-foss-2022a python-igraph/0.10.3-foss-2022a python-parasail/1.3.3-foss-2022a PyTorch/1.12.1-foss-2022a-CUDA-11.7.0 PyTorch/2.0.1-foss-2022a-CUDA-11.7.0 PyTorch/1.12.1-foss-2022a PyTorch-Lightning/2.0.2-foss-2022a-CUDA-11.7.0 PyTorch-Lightning/1.9.3-foss-2022a PyTorch-Lightning/1.9.3-foss-2022a-CUDA-11.7.0 PyTorch-Lightning/2.1.0-foss-2022a-CUDA-11.7.0 pyvista/0.36.1-foss-2022a QD/2.3.23-foss-2022a QUAST/5.2.0-foss-2022a R/4.2.3-foss-2022a RagTag/2.1.0-foss-2022a rapidfuzz/2.13.7-foss-2022a RASPA2/2.0.47-foss-2022a R-bundle-Bioconductor/3.16-foss-2022a-R-4.2.3 RepeatMasker/4.1.5-foss-2022a RootPainter/0.2.27.0-foss-2022a-CUDA-11.7.0 Rosetta/3.13-foss-2022a RSEM/1.3.3-foss-2022a scanpy/1.9.1-foss-2022a scArches/0.6.1-foss-2022a scArches/0.6.1-foss-2022a-CUDA-11.7.0 scikit-image/0.19.3-foss-2022a scikit-learn/1.1.2-foss-2022a scikit-misc/0.1.4-foss-2022a SciPy-bundle/2022.05-foss-2022a scvi-tools/0.20.1-foss-2022a-CUDA-11.7.0 scvi-tools/0.20.1-foss-2022a Seaborn/0.12.1-foss-2022a SHAP/0.41.0-foss-2022a Shapely/1.8.2-foss-2022a SignalP/6.0h-foss-2022a-fast Simpack/2023.3-foss-2022a sklearn-pandas/2.2.0-foss-2022a SLEPc/3.17.2-foss-2022a spaCy/3.4.4-foss-2022a statsmodels/0.13.1-foss-2022a steinbock/0.16.1-foss-2022a SuiteSparse/5.13.0-foss-2022a-METIS-5.1.0 SUNDIALS/6.5.1-foss-2022a SuperLU_DIST/8.1.0-foss-2022a sympy/1.11.1-foss-2022a sympy/1.10.1-foss-2022a tensorboardX/2.5.1-foss-2022a TensorFlow/2.11.0-foss-2022a TensorFlow/2.11.0-foss-2022a-CUDA-11.7.0 TIMP/1.13.6-foss-2022a-R-4.2.3 torchvision/0.15.2-foss-2022a-CUDA-11.7.0 Transformers/4.24.0-foss-2022a-CUDA-11.7.0 Transformers/4.24.0-foss-2022a Trinity/2.15.1-foss-2022a tRNAscan-SE/2.0.11-foss-2022a umap-learn/0.5.3-foss-2022a VASP/6.3.2-foss-2022a-Wannier90 VASP/6.3.2-foss-2022a VASP/6.4.2-foss-2022a VASP/6.4.2-foss-2022a-Wannier90 vcflib/1.0.9-foss-2022a-R-4.2.3 VTK/9.2.2-foss-2022a Wand/0.6.11-foss-2022a Wannier90/3.1.0-foss-2022a-serial WhatsHap/1.7-foss-2022a windspharm/1.7.0-foss-2022a WPS/4.4-foss-2022a-dmpar WRF/4.4-foss-2022a-dmpar-chem WRF/4.4-foss-2022a-dmpar xarray/2022.9.0-foss-2022a xtb/6.5.1-foss-2022a
Other Versions
These versions of foss are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
| Version | BEAR Apps Version |
|---|---|
| 2023a | 2023a |
| 2022b | 2022b |
| 2021b | 2021b |
| 2021a | 2021a |
| 2020b | 2020b |
| 2020a | 2020a |
| 2019b | 2019b |
| 2019a | 2019a |
| 2018b | 2018b |
Last modified on 12th January 2023