SciPy-bundle 2021.10-foss-2021b
There is a newer install of SciPy-bundle
Bundle of Python packages for scientific softwareAccessing SciPy-bundle 2021.10-foss-2021b
To load the module for SciPy-bundle 2021.10-foss-2021b please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):
📋
module load bear-apps/2021b
module load SciPy-bundle/2021.10-foss-2021b
BEAR Apps Version
Architectures
EL8-cascadelake — EL8-icelake — EL8-sapphirerapids
The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.
Extensions
- beniget 0.4.1
- Bottleneck 1.3.2
- deap 1.3.1
- gast 0.5.2
- mpi4py 3.1.1
- mpmath 1.2.1
- numexpr 2.7.3
- numpy 1.21.3
- pandas 1.3.4
- ply 3.11
- pythran 0.10.0
- scipy 1.7.1
More Information
For more information visit the SciPy-bundle website.
Dependencies
This version of SciPy-bundle has a direct dependency on: foss/2021b pybind11/2.7.1-GCCcore-11.2.0 Python/3.9.6-GCCcore-11.2.0
Required By
This version of SciPy-bundle is a direct dependent of: adjustText/0.7.3-foss-2021b aicsimageio/4.9.4-foss-2021b Amber/22.0-foss-2021b-AmberTools-22.3 Amber/22.0-foss-2021b-AmberTools-22.3-CUDA-11.4.1 Arrow/6.0.0-foss-2021b ArviZ/0.11.4-foss-2021b astropy/5.0.4-foss-2021b autograd/1.5-foss-2021b bcbio-gff/0.6.9-foss-2021b BEAR-Python-MSc-Bioinformatics/2021b-foss-2021b biom-format/2.1.12-foss-2021b Biopython/1.79-foss-2021b BioServices/1.10.1-foss-2021b Bisbee/20210108-foss-2021b-R-4.2.0 bokeh/2.4.2-foss-2021b bx-python/0.8.13-foss-2021b canopus_treemap/0.0.1-foss-2021b Cartopy/0.20.3-foss-2021b CIRI-long/1.1.0-foss-2021b cma/3.2.2-foss-2021b CMSeq/1.0.4-foss-2021b corner/2.2.1-foss-2021b cuCIM/23.2.0-foss-2021b-CUDA-11.4.1 CuPy/11.4.0-foss-2021b-CUDA-11.4.1 czifile/2019.7.2-foss-2021b dask/2022.1.0-foss-2021b DCC/0.5.0-foss-2021b DRAM/1.3.6-foss-2021b ecc_finder/1.0.0_20221007_67d06f3-foss-2021b emcee/3.1.3-foss-2021b EMD/0.6.2-foss-2021b GDAL/3.3.2-foss-2021b Gdspy/1.6.12-foss-2021b gprofiler-official/1.0.0-foss-2021b h5py/3.6.0-foss-2021b HDBSCAN/0.8.29-foss-2021b HTSeq/0.11.3-foss-2021b imageio/2.13.5-foss-2021b ioh/0.3.2.8.3-foss-2021b jax/0.3.13-foss-2021b-CUDA-11.4.1 jax/0.3.13-foss-2021b LAMMPS/23Jun2022-foss-2021b-kokkos-CUDA-11.4.1 LAMMPS/23Jun2022-foss-2021b-kokkos lightkurve/2.3.0-foss-2021b matplotlib/3.4.3-foss-2021b Meep/1.25.0-foss-2021b MetaboLabPy/0.8.4-foss-2021b MetaPhlAn/3.0.14-foss-2021b methylartist/1.2.6-foss-2021b mlxtend/0.19.0-foss-2021b mne-connectivity/0.5.0-foss-2021b MNE-Python/1.1.1-foss-2021b mofapy2/0.6.7-foss-2021b mofapy2/0.7.0-foss-2021b mvlearn/0.5.0-foss-2021b nanopolish/0.14.0-foss-2021b netcdf4-python/1.5.7-foss-2021b networkx/2.6.3-foss-2021b NiBabel/3.2.2-foss-2021b NLTK/3.7-foss-2021b numba/0.54.1-foss-2021b numpyro/0.9.2-foss-2021b-CUDA-11.4.1 numpyro/0.9.2-foss-2021b OpenCV/4.5.5-foss-2021b-contrib Optuna/2.10.0-foss-2021b OrthoFinder/2.5.4-foss-2021b panaroo/1.3.2-foss-2021b ParaView/5.9.1-foss-2021b-mpi PHATE/1.0.10-foss-2021b PhyloPhlAn/3.0.2-foss-2021b pingouin/0.5.3-foss-2021b PLUMED/2.7.3-foss-2021b PLUMED/2.8.0-foss-2021b pyBigWig/0.3.18-foss-2021b PyEnsembl/2.0.1-foss-2021b pyhpo/3.1.2-foss-2021b PyMC3/3.11.1-foss-2021b pymoo/0.6.0-foss-2021b PyTables/3.6.1-foss-2021b pyvis/0.2.1-foss-2021b scanpy/1.9.1-foss-2021b scanpy/1.8.2-foss-2021b scikit-bio/0.5.7-foss-2021b scikit-learn/1.0.1-foss-2021b Shapely/1.8.2-foss-2021b spektral/1.1.0-foss-2021b-CUDA-11.4.1 SplAdder/3.0.3-foss-2021b SSAM/1.0.2-foss-2021b statsmodels/0.13.1-foss-2021b TALON/20230209-foss-2021b Theano/1.1.2-foss-2021b-PyMC TOBIAS/0.13.3-foss-2021b VTK/9.1.0-foss-2021b wittgenstein/0.3.2-foss-2021b wxPython/4.2.0-foss-2021b xarray/0.20.1-foss-2021b zarr/2.13.3-foss-2021b
Other Versions
These versions of SciPy-bundle are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.
Last modified on 26th May 2022