foss 2019a

There is a newer install of foss

GNU Compiler Collection (GCC) based compiler toolchain, including OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.

Accessing foss 2019a

To load the module for foss 2019a please use this command on the BEAR systems (BlueBEAR and BEAR Cloud VMs):

📋 module load foss/2019a

BEAR Apps Version

Architectures

EL8-cascadelake — EL8-icelake — EL8-sapphirerapids

The listed architectures consist of two part: OS-CPU. The OS used is represented by EL and there are several different processor (CPU) types available on BlueBEAR. More information about the processor types on BlueBEAR is available on the BlueBEAR Job Submission page.

foss 2019a provides

GCC 8.2.0
OpenMPI 3.1.4
OpenBLAS 0.3.6
FFTW 3.3.8
ScaLAPACK 2.0.2

More Information

For more information visit the foss website.

Dependencies

This version of foss has a direct dependency on: FFTW/3.3.8-gompi-2019a GCC/8.2.0-2.31.1 OpenBLAS/0.3.6-GCC-8.2.0-2.31.1 OpenMPI/3.1.6-GCC-8.2.0-2.31.1 ScaLAPACK/2.0.2-gompi-2019a-OpenBLAS-0.3.6

Required By

This version of foss is a direct dependent of: AFNI/18.3.00-foss-2019a-Python-3.7.2 ALFA/1.1.1-foss-2019a-Python-3.7.2 Amber/18.15-AmberTools-19.8-foss-2019a-Python-2.7.15 anno/1.0-foss-2019a ANTLR/2.7.7-foss-2019a ANTs/3d41647-foss-2019a-Python-3.7.2 BamTools/2.5.1-foss-2019a basemap/1.2.1-foss-2019a-Python-2.7.15 basemap/1.2.1-foss-2019a-Python-3.7.2 BatVI/1.02-foss-2019a BCFtools/1.9-foss-2019a Bio-DB-BigFile/1.07-foss-2019a-Perl-5.28.1 Bio-DB-BigFile-jksrc/v375-foss-2019a Biopython/1.73-foss-2019a bokeh/1.3.4-foss-2019a-Python-3.7.2 Bullet/2.88-foss-2019a-Python-3.7.2 BWA/0.7.17-foss-2019a Cartopy/0.17.0-foss-2019a-Python-3.7.2 CASTEP/16.1-foss-2019a CDO/1.9.8-foss-2019a cftime/1.0.3.4-foss-2019a-Python-3.7.2 cftime/1.0.3.4-foss-2019a-Python-2.7.15 CGAL/4.14-foss-2019a-Python-2.7.15 Clairvoyante/1.02-foss-2019a-Python-3.7.2 CODEX2/20191031-foss-2019a-R-3.6.0 conumee/1.18.0-foss-2019a-R-3.6.0 corner/2.0.1-foss-2019a-Python-2.7.15 corner/2.0.1-foss-2019a-Python-3.7.2 CSBDeep/0.4.1-foss-2019a-Python-3.7.2 ctffind/4.1.13-foss-2019a Curves+/2015-foss-2019a cutadapt/2.6-foss-2019a-Python-3.7.2 dask/2.3.0-foss-2019a-Python-3.7.2 DBD-mysql/4.050-foss-2019a-Perl-5.28.1 dbscan/1.1-5-foss-2019a-R-3.6.0 DeepMod/0.1.1-foss-2019a-Python-3.7.2 deSALT/1.5-foss-2019a destiny/2.14.0-foss-2019a-R-3.6.0 dill/0.3.0-foss-2019a DosageConvertor/6761a8b-foss-2019a DPClust/2.2.8-foss-2019a-R-3.6.0 ecCodes/2.9.2-foss-2019a Eigen/3.3.4-foss-2019a EIGENSOFT/7.2.1-foss-2019a ELMoForManyLangs/0.0.2-foss-2019a-Python-3.7.2 emcee/2.2.1-foss-2019a ESMF/8.0.0-foss-2019a ESMPy/8.0.0-foss-2019a-Python-2.7.15 ESMPy/8.0.0-foss-2019a-Python-3.7.2 flappie/2.0.0-foss-2019a-Python-3.7.2 Flye/2.6-foss-2019a-Python-3.7.2 FMRIprep/20.2.0-foss-2019a-Python-3.7.2 FMRIprep/1.5.1-foss-2019a-Python-3.7.2 FMRIprep/20.0.6-foss-2019a-Python-3.7.2 FSL/5.0.11-foss-2019a-Python-3.7.2 GDAL/3.0.0-foss-2019a-Python-2.7.15 GDAL/3.0.0-foss-2019a-Python-3.7.2 GDB/8.3-foss-2019a-Python-2.7.15 gensim/3.8.1-foss-2019a-Python-3.7.2 geopy/1.20.0-foss-2019a-Python-3.7.2 GEOS/3.7.2-foss-2019a-Python-3.7.2 GEOS/3.7.2-foss-2019a-Python-2.7.15 gridGraphics/0.4-1-foss-2019a-R-3.6.0 GROMACS/2019.2-foss-2019a-PLUMED h5py/2.10.0-foss-2019a h5py/2.9.0-foss-2019a hdf5storage/0.1.15-foss-2019a HERMESv3_GR/1.0.2-foss-2019a-Python-2.7.15 HISAT2/2.1.0-foss-2019a HPL/2.3-foss-2019a HTSlib/1.9-foss-2019a Hypre/2.15.1-foss-2019a ICA-AROMA/0.4.4-beta-foss-2019a-Python-3.7.2 intervaltree/3.0.2-foss-2019a-Python-3.7.2 ioapi/3.2-foss-2019a IPython/7.7.0-foss-2019a-Python-3.7.2 karyoploteR/1.10.5-foss-2019a-R-3.6.0 Keras/2.2.4-foss-2019a-Python-3.7.2 LAMMPS/stable_7Aug2019-foss-2019a-Python-3.7.2 landscapemetrics/1.2.1-foss-2019a-R-3.6.0 landscapemetrics/1.3-foss-2019a-R-3.6.0 libStatGen/fae4fca-foss-2019a lobSTR/4.0.6-foss-2019a mappy/2.17-foss-2019a-Python-3.7.2 marginPhase/cdf139e-foss-2019a MariaDB/10.3.14-foss-2019a MAST/1.10.0-foss-2019a-R-3.6.0 matplotlib/3.0.3-foss-2019a-Python-3.7.2 matplotlib/2.2.4-foss-2019a-Python-2.7.15 matplotlib/3.1.1-foss-2019a-Python-3.7.2 memory-profiler/0.55.0-foss-2019a Minimac3/2.0.1-foss-2019a minimap2/2.13-foss-2019a MMSplice/1.0.3-foss-2019a-Python-3.7.2 MNE-Python/0.19.1-foss-2019a-Python-3.7.2 motif/2.3.8-foss-2019a MoviePy/1.0.1-foss-2019a-Python-3.7.2 nanopolish/0.11.2-foss-2019a NbClust/3.0-foss-2019a-R-3.6.0 ncbi-vdb/2.9.6-foss-2019a ncdf4/1.16.1-foss-2019a-R-3.6.0 NCO/4.8.1-foss-2019a ncview/2.1.7-foss-2019a netcdf4-python/1.5.1.2-foss-2019a-Python-2.7.15 netcdf4-python/1.5.1.2-foss-2019a-Python-3.7.2 netCDF-C++4/4.3.0-foss-2019a networkx/2.3-foss-2019a-Python-3.7.2 NGS/2.9.6-foss-2019a-Java-11 NiBabel/2.4.0-foss-2019a NiBabel/3.1.0-foss-2019a-Python-3.7.2 Nipype/1.5.1-foss-2019a-Python-3.7.2 Nipype/1.1.3-foss-2019a-Python-3.7.2 Nipype/1.4.2-foss-2019a-Python-3.7.2 NLTK/3.4.5-foss-2019a-Python-3.7.2 numba/0.43.1-foss-2019a OpenFOAM (The OpenFOAM Foundation)/5.0-20180108-foss-2019a OpenFOAM (The OpenFOAM Foundation)/5.0-foss-2019a OpenFOAM (The OpenFOAM Foundation)/7-foss-2019a ParaView/5.4.1-foss-2019a-mpi PETSc/3.11.1-foss-2019a PLUMED/2.5.2-foss-2019a PnetCDF/1.11.2-foss-2019a profvis/0.3.6-foss-2019a-R-3.6.0 ptemcee/1.0.0-foss-2019a pybedtools/0.8.0-foss-2019a pyblosc/1.8.1-foss-2019a-Python-3.7.2 PyPy/3.6-v7.2.0-foss-2019a PyPy/2.7-v7.2.0-foss-2019a Pysam/0.15.2-foss-2019a PyTorch/1.2.0-foss-2019a-Python-3.7.2 QDNAseq/1.20.0-foss-2019a-R-3.6.0 qqman/0.1.4-foss-2019a-R-3.6.0 R/3.6.0-foss-2019a R-bundle-Bioconductor/3.9-foss-2019a-R-3.6.0 RELION/3.0.8-foss-2019a rgdal/1.4-4-foss-2019a-R-3.6.0 rMATS/4.0.2-foss-2019a-Python-2.7.15 RNA_MUTECT/1.0-foss-2019a rpy2/2.8.2-foss-2019a-Python-3.7.2 SAIGE/0.35.8.8-foss-2019a-R-3.6.0 scikit-image/0.15.0-foss-2019a-Python-3.7.2 scikit-learn/0.20.3-foss-2019a scikit-learn/0.21.3-foss-2019a-Python-3.7.2 scikit-multiflow/0.4.1-foss-2019a-Python-3.7.2 SciPy-bundle/2019.03-foss-2019a Seaborn/0.9.0-foss-2019a-Python-3.7.2 Seurat/3.1.1-foss-2019a-R-3.6.0 sklearn-crfsuite/0.3.6-foss-2019a-Python-3.7.2 spacy/2.1.8-foss-2019a-Python-3.7.2 spant/0.19.0-foss-2019a-R-3.6.0 spant/0.18.0-foss-2019a-R-3.6.0 Spark/2.4.4-foss-2019a-Hadoop-2.7-Java-11-Python-3.7.2 SpliceAI/1.3-foss-2019a-Python-3.7.2 SPOT-RNA/770ab5c-foss-2019a-Python-3.7.2 Stampy/1.0.32-foss-2019a-Python-2.7.15 statsmodels/0.10.1-foss-2019a SuiteSparse/5.4.0-foss-2019a-METIS-5.1.0 SuperLU/5.2.1-foss-2019a talos/0.6.3-foss-2019a-Python-3.7.2 TensorFlow/1.13.1-foss-2019a-Python-3.7.2 TensorFlow/1.14.0-foss-2019a-Python-3.7.2 Theano/1.0.4-foss-2019a tombo/1.5-foss-2019a-Python-3.7.2 torchvision/0.3.0-foss-2019a-Python-3.7.2 tqdm/4.33.0-foss-2019a-Python-3.7.2 TwoSampleMR/0.4.25-foss-2019a-R-3.6.0 utm/0.5.0-foss-2019a-Python-2.7.15 utm/0.5.0-foss-2019a-Python-3.7.2 Valgrind/3.15.0-foss-2019a velocyto/0.17.17-foss-2019a-Python-3.7.2 VEP/96.0-foss-2019a-Perl-5.28.1 VTK/8.2.0-foss-2019a-Python-3.7.2 WGCNA/1.69-foss-2019a-R-3.6.0 WhatsHap/0.18-foss-2019a-Python-3.7.2 xarray/0.13.0-foss-2019a-Python-3.7.2 xESMF/0.2.1-foss-2019a-Python-3.7.2 YAXT/0.6.0-foss-2019a

Other Versions

These versions of foss are available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). These will be retained in accordance with our Applications Support and Retention Policy.

Version	BEAR Apps Version
2023a	2023a
2022b	2022b
2022a	2022a
2021b	2021b
2021a	2021a
2020b	2020b
2020a	2020a
2019b	2019b
2018b	2018b

Last modified on 5th July 2019