Installed Applications: 2022b and EL8-icelake

Applications available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). All 2022b or EL8-icelake applications. In any one job, or session, you should use applications from only one BEAR Apps Version.

Some of the nodes of this architecture have GPUs. The applications that run on the GPU nodes will usually have CUDA or fosscuda as part of the version. Please see the GPU information page for details about the available GPUs and targetting jobs to specific GPU types. The available GPU types are:

  • NVIDIA A100
  • NVIDIA A30
Application Version
ABAQUS 2024-hotfix-2405
Abseil 20230125.2-GCCcore-12.2.0
AdmixTools 7.0.2-foss-2022b-R-4.3.1-Perl-5.36.0
aiohttp 3.8.5-GCCcore-12.2.0
ALAMODE 1.4.2-foss-2022b
alleleCount 4.3.0-GCC-12.2.0
alsa-lib 1.2.10-GCCcore-12.2.0
alsa-lib 1.2.10
AMRFinderPlus 3.11.26-gompi-2022b
ANSYS 2024R1
ant 1.10.12-Java-11
APR 1.7.4-GCCcore-12.2.0
APR-util 1.6.3-GCCcore-12.2.0
ARAGORN 1.2.41-foss-2022b
Archive-Zip 1.68-GCCcore-12.2.0
archspec 0.2.0-GCCcore-12.2.0
Armadillo 11.4.3-foss-2022b
arpack-ng 3.8.0-foss-2022b
Arrow 11.0.0-gfbf-2022b
arrow-R 11.0.0.3-foss-2022b-R-4.3.1
ASCAT 3.1.2-foss-2022b-R-4.3.1
ASE 3.22.1-gfbf-2022b
ATK 2.38.0-GCCcore-12.2.0
at-spi2-atk 2.38.0-GCCcore-12.2.0
at-spi2-core 2.46.0-GCCcore-12.2.0
AUGUSTUS 3.5.0-foss-2022b
Autoconf 2.71-GCCcore-12.2.0
Autoconf 2.69
autograd 1.6.3-foss-2022b
Automake 1.16.5-GCCcore-12.2.0
Autotools 20220317-GCCcore-12.2.0
bakta 1.9.4-foss-2022b
BamTools 2.5.2-GCC-12.2.0
Barracuda_Virtual_Reactor 24.0.0-GCCcore-12.2.0
BAT 2.9.5-foss-2022b-R-4.3.1
Battenberg 2.2.9-foss-2022b-R-4.3.1
baysor 0.6.2-x86_x64-linux
Bazel 6.3.1-GCCcore-12.2.0
BBMap 39.01-GCC-12.2.0
bcbio-gff 0.7.0-foss-2022b
BCFtools 1.17-GCC-12.2.0
BEAR-Python-MSc-Bioinformatics 2022b-foss-2022b
BEAR-R-bio 2022b-foss-2022b-R-4.3.1
BeautifulSoup 4.11.1-GCCcore-12.2.0
BEDTools 2.30.0-GCC-12.2.0
binutils 2.39-GCCcore-12.2.0
binutils 2.39
Bio-DB-HTS 3.01-GCC-12.2.0
biom-format 2.1.15-foss-2022b
BioPerl 1.7.8-GCCcore-12.2.0
Biopython 1.81-foss-2022b
BioServices 1.11.2-foss-2022b
Bison 3.8.2-GCCcore-12.2.0
Bison 3.8.2
BLAST+ 2.14.0-gompi-2022b
BLAT 3.7-GCC-12.2.0
BLIS 0.9.0-GCC-12.2.0
Blosc 1.21.3-GCCcore-12.2.0
Blosc2 2.8.0-GCCcore-12.2.0
bokeh 3.2.1-foss-2022b
Boost 1.81.0-GCC-12.2.0
Boost 1.75.0-GCC-12.2.0
Boost.Python 1.81.0-GCC-12.2.0
Bowtie 1.3.1-GCC-12.2.0
Bowtie2 2.5.1-GCC-12.2.0
Brotli 1.0.9-GCCcore-12.2.0
Brunsli 0.1-GCCcore-12.2.0
BuDDy 2.4-GCCcore-12.2.0
BUSCO 5.4.7-foss-2022b
BWA 0.7.17-GCCcore-12.2.0
bzip2 1.0.8-GCCcore-12.2.0
cairo 1.17.4-GCCcore-12.2.0
CapnProto 0.10.3-GCCcore-12.2.0
CASTEP 24.1-foss-2022b
Catch2 2.13.9-GCCcore-12.2.0
Cbc 2.10.5-foss-2022b
CD-HIT 4.8.1-GCC-12.2.0
celldex 1.10.1-foss-2022b-R-4.3.1
Cellphy 0.9.2-foss-2022b
CellRanger 8.0.0
Cereal 1.3.2-GCCcore-12.2.0
CFITSIO 4.2.0-GCCcore-12.2.0
CGAL 5.5.2-GCCcore-12.2.0
Cgl 0.60.7-foss-2022b
CharLS 2.4.2-GCCcore-12.2.0
Check 0.15.2-GCCcore-12.2.0
CIF2Cell 1.2.10-GCCcore-12.2.0
Circos 0.69-9-GCCcore-12.2.0
clinker 0.0.28-foss-2022b
Clp 1.17.8-foss-2022b
cma 3.3.0-foss-2022b
CMake 3.24.3-GCCcore-12.2.0
CMSeq 1.0.4-foss-2022b
coexist 0.3.2-foss-2022b
CoinUtils 2.11.9-GCC-12.2.0
Compress-Raw-Zlib 2.202-GCCcore-12.2.0
COMSOL 6.1.0.357
CoordgenLibs 3.0.2-gompi-2022b
cppy 1.2.1-GCCcore-12.2.0
CREST 3.0.1-gfbf-2022b
CST-Studio-Suite 2024.SP2-GCCcore-12.2.0-Java-17
CUDA 12.0.0
cuDNN 8.8.0.121-CUDA-12.0.0
cURL 7.86.0-GCCcore-12.2.0
cutadapt 4.4-GCCcore-12.2.0
Cython 3.0.8-GCCcore-12.2.0
Cython 0.29.37-GCCcore-12.2.0
dask 2023.7.1-foss-2022b
DB 18.1.40-GCCcore-12.2.0
DBD-mysql 4.050-GCC-12.2.0
DBus 1.15.2-GCCcore-12.2.0
dcm2bids 3.1.1-foss-2022b
dcm2niix 1.0.20230411-GCCcore-12.2.0
deal.II 9.5.1-foss-2022b-muparser
deal.II 9.5.1-foss-2022b
defense-finder 1.3.0-foss-2022b
DendroPy 4.5.2-GCCcore-12.2.0
dftd4 3.4.0-gfbf-2022b
DIAMOND 2.1.8-GCC-12.2.0
digitalDLSorteR 1.0.1-foss-2022b-R-4.3.1
dill 0.3.7-GCCcore-12.2.0
double-conversion 3.2.1-GCCcore-12.2.0
Doxygen 1.9.5-GCCcore-12.2.0
EarlGrey 4.4.0
ecBuild 3.8.0
ecCodes 2.31.0-gompi-2022b
EDTA 2.2.0
eggnog-mapper 2.1.11-foss-2022b
Eigen 3.4.0-GCCcore-12.2.0
elfutils 0.189-GCCcore-12.2.0
ELPA 2022.05.001-foss-2022b
ETE 3.1.3-foss-2022b
expat 2.4.9-GCCcore-12.2.0
expecttest 0.1.3-GCCcore-12.2.0
faahKO 1.40.0-foss-2022b-R-4.3.1
fastahack 1.0.0-GCCcore-12.2.0
FastTree 2.1.11-GCCcore-12.2.0
fermi-lite 20190320-GCCcore-12.2.0
FFmpeg 5.1.2-GCCcore-12.2.0
ffnvcodec 11.1.5.2
FFTW 3.3.10-GCC-12.2.0
FFTW.MPI 3.3.10-gompi-2022b
FHI-aims 231212_1-intel-2022b
file 5.45-GCCcore-12.2.0
filevercmp 20191210-GCCcore-12.2.0
Fiona 1.9.2-foss-2022b
FLAC 1.4.2-GCCcore-12.2.0
Flask 2.2.3-GCCcore-12.2.0
flatbuffers 23.1.4-GCCcore-12.2.0
flatbuffers-python 23.1.4-GCCcore-12.2.0
flex 2.6.4-GCCcore-12.2.0
flex 2.6.4
FlexiBLAS 3.2.1-GCC-12.2.0
flowTrans 1.52.0-foss-2022b-R-4.3.1
fontconfig 2.14.1-GCCcore-12.2.0
foss 2022b
freebayes 1.3.8-foss-2022b-R-4.3.1
FreeImage 3.18.0-GCCcore-12.2.0
freetype 2.12.1-GCCcore-12.2.0
FriBidi 1.0.12-GCCcore-12.2.0
FSL 6.0.7.9
FSL 6.0.7.6
fsom 20151117-GCCcore-12.2.0
GATK 4.4.0.0-GCCcore-12.2.0-Java-17
GATK 4.3.0.0-GCCcore-12.2.0-Java-11
gc 8.2.4-GCCcore-12.2.0
GCC 12.2.0
GCCcore 12.2.0
GD 2.75-GCCcore-12.2.0
GDAL 3.6.2-foss-2022b
Gdk-Pixbuf 2.42.10-GCCcore-12.2.0
GDRCopy 2.3-GCCcore-12.2.0
Gdspy 1.6.13-foss-2022b
geopandas 0.12.2-foss-2022b
GEOS 3.11.1-GCC-12.2.0
gettext 0.21.1-GCCcore-12.2.0
gettext 0.21.1
gfbf 2022b
gffutils 0.12-foss-2022b
ggfortify 0.4.16-foss-2022b-R-4.3.1
Ghostscript 10.0.0-GCCcore-12.2.0
giflib 5.2.1-GCCcore-12.2.0
git 2.38.1-GCCcore-12.2.0-nodocs
GitPython 3.1.31-GCCcore-12.2.0
GLib 2.75.0-GCCcore-12.2.0
GLM 0.9.9.8-GCCcore-12.2.0
GLPK 5.0-GCCcore-12.2.0
GMAP-GSNAP 2023-04-20-GCC-12.2.0
GMP 6.2.1-GCCcore-12.2.0
gmpy2 2.1.5-GCC-12.2.0
gnuplot 5.4.6-GCCcore-12.2.0
Go 1.22.1
Go 1.21.6
GObject-Introspection 1.74.0-GCCcore-12.2.0
gompi 2022b
googletest 1.12.1-GCCcore-12.2.0
gperf 3.1-GCCcore-12.2.0
gprofiler-official 1.0.0-foss-2022b
Graphene 1.10.8-GCCcore-12.2.0
graphite2 1.3.14-GCCcore-12.2.0
Graphviz 8.1.0-GCCcore-12.2.0
graphviz 0.20.1-foss-2022b
groff 1.22.4-GCCcore-12.2.0
Groovy 4.0.15-Java-17
GSL 2.7-GCCcore-12.2.0
GSL 2.7-GCC-12.2.0
GST-plugins-bad 1.22.5-GCC-12.2.0
GST-plugins-base 1.22.1-GCCcore-12.2.0
GStreamer 1.22.1-GCCcore-12.2.0
GTK3 3.24.35-GCCcore-12.2.0
GTK4 4.11.3-GCC-12.2.0
GTS 0.7.6-GCCcore-12.2.0
Guile 3.0.9-GCCcore-12.2.0
gzip 1.12-GCCcore-12.2.0
h5py 3.8.0-foss-2022b
HarfBuzz 5.3.1-GCCcore-12.2.0
Harminv 1.4.2-foss-2022b
HDF 4.2.15-GCCcore-12.2.0
HDF5 1.14.0-gompi-2022b
hdf5storage 0.1.19-foss-2022b
HDFView 3.2.0-Java-17-centos8
hdWGCNA 20240201-foss-2022b-R-4.3.1
help2man 1.49.2-GCCcore-12.2.0
Highway 1.0.3-GCCcore-12.2.0
HISAT2 2.2.1-gompi-2022b
HMMER 3.3.2-gompi-2022b
hmmlearn 0.3.0-foss-2022b
Horovod 0.28.1-foss-2022b-CUDA-12.0.0-PyTorch-2.1.2
HPL 2.3-foss-2022b
HTSlib 1.17-GCC-12.2.0
hwloc 2.8.0-GCCcore-12.2.0
hypervolume 3.1.3-foss-2022b-R-4.3.1
hypothesis 6.68.2-GCCcore-12.2.0
Hypre 2.27.0-foss-2022b
ICU 72.1-GCCcore-12.2.0
iimpi 2022b
IJulia 1.24.0-Julia-1.10.0
imageio 2.31.1-foss-2022b
ImageMagick 7.1.0-53-GCCcore-12.2.0
Imath 3.1.6-GCCcore-12.2.0
imkl 2022.2.1
imkl-FFTW 2022.2.1-iimpi-2022b
impi 2021.7.1-intel-compilers-2022.2.1
IMPUTE2 2.3.2_x86_64_static
Infernal 1.1.4-foss-2022b
intel 2022b
intel-compilers 2022.2.1
intermine 1.13.0-GCCcore-12.2.0
intervaltree 0.1-GCCcore-12.2.0
intltool 0.51.0-GCCcore-12.2.0
ipykernel 6.25.0-GCCcore-12.2.0
IPython 8.14.0-GCCcore-12.2.0
IQ-TREE 2.2.2.6-gompi-2022b
iRF 3.0.0-foss-2022b-R-4.3.1
IRkernel 1.3.2-foss-2022b-R-4.3.1
ISA-L 2.30.0-GCCcore-12.2.0
JACK 1.9.22-GCCcore-12.2.0
JasPer 4.0.0-GCCcore-12.2.0
Java 21.0.2
Java 17.0.6
Java 17
Java 11.0.18
Java 11
jbigkit 2.1-GCCcore-12.2.0
Jblob 3.0
Jellyfish 2.3.1-GCC-12.2.0
Jellyfish 2.3.0-GCC-12.2.0
jemalloc 5.3.0-GCCcore-12.2.0
json-c 0.16-GCCcore-12.2.0
JsonCpp 1.9.5-GCCcore-12.2.0
json-fortran 8.3.0-GCC-12.2.0
Judy 1.0.5-GCCcore-12.2.0
Julia 1.9.3-linux-x86_64
Julia 1.10.0-linux-x86_64
JupyterLab 4.0.3-GCCcore-12.2.0
jupyter-server 2.7.0-GCCcore-12.2.0
KaHIP 3.14-gompi-2022b
Kaleido 0.2.1-GCCcore-12.2.0
kallisto 0.48.0-gompi-2022b
kinbot 2.2.1-foss-2022b
KMC 3.2.4-GCC-12.2.0
KrakenUniq 1.0.4-GCC-12.2.0
LAME 3.100-GCCcore-12.2.0
LAMMPS-MACE 20240201-foss-2022b-CUDA-12.0.0
LERC 4.0.0-GCCcore-12.2.0
Lethe 20231028-foss-2022b
Lethe 20230901-foss-2022b
libaec 1.0.6-GCCcore-12.2.0
libaio 0.3.113-GCCcore-12.2.0
libarchive 3.6.1-GCCcore-12.2.0
libcerf 2.3-GCCcore-12.2.0
libctl 4.5.1-GCCcore-12.2.0
libdeflate 1.15-GCCcore-12.2.0
libdrm 2.4.114-GCCcore-12.2.0
libepoxy 1.5.10-GCCcore-12.2.0
libevent 2.1.12-GCCcore-12.2.0
libfabric 1.16.1-GCCcore-12.2.0
libffi 3.4.4-GCCcore-12.2.0
libfyaml 0.9-GCCcore-12.2.0
libgd 2.3.3-GCCcore-12.2.0
libGDSII 0.21-GCCcore-12.2.0
libgeotiff 1.7.1-GCCcore-12.2.0
libgit2 1.5.0-GCCcore-12.2.0
libGLU 9.0.2-GCCcore-12.2.0
libglvnd 1.6.0-GCCcore-12.2.0
libiconv 1.17-GCCcore-12.2.0
libidn2 2.3.4-GCCcore-12.2.0
libjpeg-turbo 2.1.4-GCCcore-12.2.0
libogg 1.3.5-GCCcore-12.2.0
libopus 1.3.1-GCCcore-12.2.0
libpciaccess 0.17-GCCcore-12.2.0
libpng 1.6.38-GCCcore-12.2.0
libreadline 8.2-GCCcore-12.2.0
libsigsegv 2.14-GCCcore-12.2.0
libsndfile 1.2.0-GCCcore-12.2.0
libsodium 1.0.18-GCCcore-12.2.0
libtecla 1.6.3-GCCcore-12.2.0
LibTIFF 4.4.0-GCCcore-12.2.0
libtirpc 1.3.3-GCCcore-12.2.0
libtool 2.4.7-GCCcore-12.2.0
libunistring 1.1-GCCcore-12.2.0
libunwind 1.6.2-GCCcore-12.2.0
libvorbis 1.3.7-GCCcore-12.2.0
libwebp 1.3.1-GCCcore-12.2.0
libxc 6.1.0-GCC-12.2.0
libxml2 2.10.3-GCCcore-12.2.0
libxslt 1.1.37-GCCcore-12.2.0
libyaml 0.2.5-GCCcore-12.2.0
LittleCMS 2.14-GCCcore-12.2.0
LLVM 15.0.5-GCCcore-12.2.0
LLVM 14.0.6-GCCcore-12.2.0-llvmlite
LMDB 0.9.29-GCCcore-12.2.0
lpsolve 5.5.2.11-GCC-12.2.0
LSD2 2.4.1-GCCcore-12.2.0
Lua 5.4.4-GCCcore-12.2.0
lxml 4.9.2-GCCcore-12.2.0
lz4 1.9.4-GCCcore-12.2.0
LZO 2.10-GCCcore-12.2.0
M4 1.4.19-GCCcore-12.2.0
M4 1.4.19
M4 1.4.17
MACS3 3.0.1-foss-2022b
maeparser 1.3.1-gompi-2022b
MAFFT 7.505-GCC-12.2.0-with-extensions
maftools 2.16.0-foss-2022b-R-4.3.1
magma 2.7.1-foss-2022b-CUDA-12.0.0
make 4.3-GCCcore-12.2.0
Mako 1.2.4-GCCcore-12.2.0
Mamba 23.1.0-4
MariaDB 10.11.2-GCC-12.2.0
Mash 2.3-GCC-12.2.0
MAST 1.26.0-foss-2022b-R-4.3.1
MATIO 1.5.23-GCCcore-12.2.0
MATLAB 2023b-r6
matplotlib 3.7.0-gfbf-2022b
maturin 1.1.0-GCCcore-12.2.0
Maude 3.1-GCCcore-12.2.0
mctc-lib 0.3.1-GCC-12.2.0
Meep 1.28.0-foss-2022b
Mesa 22.2.4-GCCcore-12.2.0
Meson 1.1.1-GCCcore-12.2.0
Meson 0.64.0-GCCcore-12.2.0
meson-python 0.13.2-GCCcore-12.2.0
meson-python 0.11.0-GCCcore-12.2.0
MetaCortex 64095a8-GCCcore-12.2.0
MetaEuk 6-GCC-12.2.0
metagraph 0.3.6-gfbf-2022b
MetaPhlAn 4.1.0-foss-2022b
METIS 5.1.0-GCCcore-12.2.0
mgcv 1.9-1-foss-2022b-R-4.3.1
Miniconda3 22.11.1-1
Miniforge3 24.1.2-0
MiXCR 4.6.0-Java-17
mlxtend 0.22.0-gfbf-2022b
MMseqs2 14-7e284-gompi-2022b
MNE-Python 1.6.1-foss-2022b
MOB-suite 3.1.9-foss-2022b
MOFA2 1.10.0-foss-2022b-R-4.3.1
mofapy2 0.7.0-foss-2022b
monocle 2.28.0-foss-2022b-R-4.3.1
Mosaic 3.4
motif 2.3.8-GCCcore-12.2.0
MPB 1.11.1-foss-2022b
MPC 1.3.1-GCCcore-12.2.0
MPFR 4.2.0-GCCcore-12.2.0
mpi4py 3.1.4-gompi-2022b
msgpack 0.5.6-foss-2022b
msgpack-c 6.0.0-GCC-12.2.0
msPurity 1.26.0-foss-2022b-R-4.3.1
MSstats 4.8.6-foss-2022b-R-4.3.1
mstore 0.2.0-GCC-12.2.0
multicharge 0.2.0-gfbf-2022b
multichoose 1.0.3-GCCcore-12.2.0
MUMPS 5.6.1-foss-2022b-metis
muParser 2.3.4-GCCcore-12.2.0
MUSCLE 5.1.0-GCCcore-12.2.0
mvlearn 0.5.0-foss-2022b
NASM 2.15.05-GCCcore-12.2.0
ncbi-vdb 3.0.10-gompi-2022b
NCCL 2.16.2-GCCcore-12.2.0-CUDA-12.0.0
ncurses 6.3-GCCcore-12.2.0
ncurses 6.3
netCDF 4.9.0-gompi-2022b
netcdf4-python 1.6.3-foss-2022b
netCDF-Fortran 4.6.0-gompi-2022b
nettle 3.8.1-GCCcore-12.2.0
networkx 3.0-gfbf-2022b
networkx 2.8.8-gfbf-2022b
NextDenovo 2.5.2-GCCcore-12.2.0
Nextflow 24.04.2
NiBabel 5.2.0-gfbf-2022b
Nilearn 0.10.3-gfbf-2022b
Ninja 1.11.1-GCCcore-12.2.0
nlohmann_json 3.11.2-GCCcore-12.2.0
NLopt 2.7.1-GCCcore-12.2.0
NLopt 2.7.1-foss-2022b-Python
NLTK 3.8.1-foss-2022b
nodejs 18.12.1-GCCcore-12.2.0
NSPR 4.35-GCCcore-12.2.0
NSS 3.85-GCCcore-12.2.0
nsync 1.26.0-GCCcore-12.2.0
numactl 2.0.16-GCCcore-12.2.0
numba 0.58.1-foss-2022b
numdiff 5.9.0-GCCcore-12.2.0
occt 7.7.0-foss-2022b
OpenBabel 3.1.1-gompi-2022b
OpenBLAS 0.3.21-GCC-12.2.0
OpenCV 4.8.0-foss-2022b-contrib
OpenEXR 3.1.5-GCCcore-12.2.0
OpenFOAM (OpenCFD Ltd) v2312-foss-2022b
OpenFOAM (OpenCFD Ltd) v2306-foss-2022b
OpenJPEG 2.5.0-GCCcore-12.2.0
OpenMC 0.14.0-foss-2022b
OpenMEEG 2.5.7-foss-2022b
OpenMPI 4.1.4-GCC-12.2.0
OpenPGM 5.2.122-GCCcore-12.2.0
openpyxl 3.1.2-GCCcore-12.2.0
OpenSSL 1.1
Osi 0.108.8-GCC-12.2.0
OSU-Micro-Benchmarks 6.2-gompi-2022b
ottr 1.4.0-foss-2022b-R-4.3.1
p4est 2.3.6-foss-2022b
pandaR 1.32.0-foss-2022b-R-4.3.1
Pandoc 2.13
Pango 1.50.12-GCCcore-12.2.0
parallel 20230722-GCCcore-12.2.0
Parallel-Hashmap 1.3.12-GCCcore-12.2.0
Paralleltask 0.2.2-GCCcore-12.2.0
ParaView 5.13.1
ParaView 5.12.1
ParaView 5.11.1-foss-2022b
ParMETIS 4.0.3-gompi-2022b
patchelf 0.17.2-GCCcore-12.2.0
PCRE 8.45-GCCcore-12.2.0
PCRE2 10.40-GCCcore-12.2.0
PDM 2.5.5-GCCcore-12.2.0
pept 0.5.1-foss-2022b
Perl 5.36.0-GCCcore-12.2.0-minimal
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protobuf 23.0-GCCcore-12.2.0
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Python 3.10.8-GCCcore-12.2.0-bare
Python 3.10.8-GCCcore-12.2.0
Python 2.7.18-GCCcore-12.2.0-bare
python-isal 1.1.0-GCCcore-12.2.0
PyTorch 2.1.2-foss-2022b-CUDA-12.0.0
PyTorch 2.1.2-foss-2022b
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rclone 1.65.2
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sympy 1.12-gfbf-2022b
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VTK 9.2.6-foss-2022b
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xarray 2023.4.2-gfbf-2022b
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