Installed Applications: 2022b and EL8-sapphirerapids

Applications available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). All 2022b or EL8-sapphirerapids applications. In any one job, or session, you should use applications from only one BEAR Apps Version.

Application Version
ABAQUS 2024-hotfix-2405
Abseil 20230125.2-GCCcore-12.2.0
AdmixTools 7.0.2-foss-2022b-R-4.3.1-Perl-5.36.0
aiohttp 3.8.5-GCCcore-12.2.0
ALAMODE 1.4.2-foss-2022b
alleleCount 4.3.0-GCC-12.2.0
alsa-lib 1.2.10-GCCcore-12.2.0
alsa-lib 1.2.10
AMRFinderPlus 3.11.26-gompi-2022b
ANSYS 2024R1
ant 1.10.12-Java-11
APR 1.7.4-GCCcore-12.2.0
APR-util 1.6.3-GCCcore-12.2.0
ARAGORN 1.2.41-foss-2022b
Archive-Zip 1.68-GCCcore-12.2.0
archspec 0.2.0-GCCcore-12.2.0
Armadillo 11.4.3-foss-2022b
arpack-ng 3.8.0-foss-2022b
Arrow 11.0.0-gfbf-2022b
arrow-R 11.0.0.3-foss-2022b-R-4.3.1
ASCAT 3.1.2-foss-2022b-R-4.3.1
ASE 3.22.1-gfbf-2022b
ATK 2.38.0-GCCcore-12.2.0
at-spi2-atk 2.38.0-GCCcore-12.2.0
at-spi2-core 2.46.0-GCCcore-12.2.0
AUGUSTUS 3.5.0-foss-2022b
Autoconf 2.71-GCCcore-12.2.0
Autoconf 2.69
autograd 1.6.3-foss-2022b
Automake 1.16.5-GCCcore-12.2.0
Autotools 20220317-GCCcore-12.2.0
bakta 1.9.4-foss-2022b
BamTools 2.5.2-GCC-12.2.0
Barracuda_Virtual_Reactor 24.0.0-GCCcore-12.2.0
BAT 2.9.5-foss-2022b-R-4.3.1
Battenberg 2.2.9-foss-2022b-R-4.3.1
baysor 0.6.2-x86_x64-linux
Bazel 6.3.1-GCCcore-12.2.0
BBMap 39.01-GCC-12.2.0
bcbio-gff 0.7.0-foss-2022b
BCFtools 1.17-GCC-12.2.0
BEAR-Python-MSc-Bioinformatics 2022b-foss-2022b
BEAR-R-bio 2022b-foss-2022b-R-4.3.1
BeautifulSoup 4.11.1-GCCcore-12.2.0
BEDTools 2.30.0-GCC-12.2.0
binutils 2.39-GCCcore-12.2.0
binutils 2.39
Bio-DB-HTS 3.01-GCC-12.2.0
biom-format 2.1.15-foss-2022b
BioPerl 1.7.8-GCCcore-12.2.0
Biopython 1.81-foss-2022b
BioServices 1.11.2-foss-2022b
Bison 3.8.2-GCCcore-12.2.0
Bison 3.8.2
BLAST+ 2.14.0-gompi-2022b
BLAT 3.7-GCC-12.2.0
BLIS 0.9.0-GCC-12.2.0
bokeh 3.2.1-foss-2022b
Boost 1.81.0-GCC-12.2.0
Boost 1.75.0-GCC-12.2.0
Boost.Python 1.81.0-GCC-12.2.0
Bowtie 1.3.1-GCC-12.2.0
Bowtie2 2.5.1-GCC-12.2.0
Brotli 1.0.9-GCCcore-12.2.0
Brunsli 0.1-GCCcore-12.2.0
BuDDy 2.4-GCCcore-12.2.0
BUSCO 5.4.7-foss-2022b
BWA 0.7.17-GCCcore-12.2.0
bzip2 1.0.8-GCCcore-12.2.0
cairo 1.17.4-GCCcore-12.2.0
CapnProto 0.10.3-GCCcore-12.2.0
CASTEP 24.1-foss-2022b
Catch2 2.13.9-GCCcore-12.2.0
Cbc 2.10.5-foss-2022b
CD-HIT 4.8.1-GCC-12.2.0
celldex 1.10.1-foss-2022b-R-4.3.1
Cellphy 0.9.2-foss-2022b
CellRanger 8.0.0
Cereal 1.3.2-GCCcore-12.2.0
CFITSIO 4.2.0-GCCcore-12.2.0
CGAL 5.5.2-GCCcore-12.2.0
Cgl 0.60.7-foss-2022b
CharLS 2.4.2-GCCcore-12.2.0
Check 0.15.2-GCCcore-12.2.0
CIF2Cell 1.2.10-GCCcore-12.2.0
Circos 0.69-9-GCCcore-12.2.0
clinker 0.0.28-foss-2022b
Clp 1.17.8-foss-2022b
cma 3.3.0-foss-2022b
CMake 3.24.3-GCCcore-12.2.0
CMSeq 1.0.4-foss-2022b
coexist 0.3.2-foss-2022b
CoinUtils 2.11.9-GCC-12.2.0
Compress-Raw-Zlib 2.202-GCCcore-12.2.0
COMSOL 6.1.0.357
CoordgenLibs 3.0.2-gompi-2022b
cppy 1.2.1-GCCcore-12.2.0
CREST 3.0.1-gfbf-2022b
CST-Studio-Suite 2024.SP2-GCCcore-12.2.0-Java-17
CUDA 12.0.0
cuDNN 8.8.0.121-CUDA-12.0.0
cURL 7.86.0-GCCcore-12.2.0
cutadapt 4.4-GCCcore-12.2.0
Cython 3.0.8-GCCcore-12.2.0
Cython 0.29.37-GCCcore-12.2.0
dask 2023.7.1-foss-2022b
DB 18.1.40-GCCcore-12.2.0
DBD-mysql 4.050-GCC-12.2.0
DBus 1.15.2-GCCcore-12.2.0
dcm2bids 3.1.1-foss-2022b
dcm2niix 1.0.20230411-GCCcore-12.2.0
deal.II 9.5.1-foss-2022b-muparser
deal.II 9.5.1-foss-2022b
DendroPy 4.5.2-GCCcore-12.2.0
dftd4 3.4.0-gfbf-2022b
DIAMOND 2.1.8-GCC-12.2.0
digitalDLSorteR 1.0.1-foss-2022b-R-4.3.1
dill 0.3.7-GCCcore-12.2.0
double-conversion 3.2.1-GCCcore-12.2.0
Doxygen 1.9.5-GCCcore-12.2.0
EarlGrey 4.4.0
ecBuild 3.8.0
ecCodes 2.31.0-gompi-2022b
EDTA 2.2.0
eggnog-mapper 2.1.11-foss-2022b
Eigen 3.4.0-GCCcore-12.2.0
elfutils 0.189-GCCcore-12.2.0
ELPA 2022.05.001-foss-2022b
expat 2.4.9-GCCcore-12.2.0
expecttest 0.1.3-GCCcore-12.2.0
faahKO 1.40.0-foss-2022b-R-4.3.1
fastahack 1.0.0-GCCcore-12.2.0
FastTree 2.1.11-GCCcore-12.2.0
fermi-lite 20190320-GCCcore-12.2.0
FFmpeg 5.1.2-GCCcore-12.2.0
ffnvcodec 11.1.5.2
FFTW 3.3.10-GCC-12.2.0
FFTW.MPI 3.3.10-gompi-2022b
FHI-aims 231212_1-intel-2022b
file 5.45-GCCcore-12.2.0
filevercmp 20191210-GCCcore-12.2.0
Fiona 1.9.2-foss-2022b
FLAC 1.4.2-GCCcore-12.2.0
Flask 2.2.3-GCCcore-12.2.0
flatbuffers 23.1.4-GCCcore-12.2.0
flatbuffers-python 23.1.4-GCCcore-12.2.0
flex 2.6.4-GCCcore-12.2.0
flex 2.6.4
FlexiBLAS 3.2.1-GCC-12.2.0
flowTrans 1.52.0-foss-2022b-R-4.3.1
fontconfig 2.14.1-GCCcore-12.2.0
foss 2022b
freebayes 1.3.8-foss-2022b-R-4.3.1
FreeImage 3.18.0-GCCcore-12.2.0
freetype 2.12.1-GCCcore-12.2.0
FriBidi 1.0.12-GCCcore-12.2.0
FSL 6.0.7.9
FSL 6.0.7.6
fsom 20151117-GCCcore-12.2.0
GATK 4.4.0.0-GCCcore-12.2.0-Java-17
GATK 4.3.0.0-GCCcore-12.2.0-Java-11
gc 8.2.4-GCCcore-12.2.0
GCC 12.2.0
GCCcore 12.2.0
GD 2.75-GCCcore-12.2.0
GDAL 3.6.2-foss-2022b
Gdk-Pixbuf 2.42.10-GCCcore-12.2.0
GDRCopy 2.3-GCCcore-12.2.0
Gdspy 1.6.13-foss-2022b
geopandas 0.12.2-foss-2022b
GEOS 3.11.1-GCC-12.2.0
gettext 0.21.1-GCCcore-12.2.0
gettext 0.21.1
gfbf 2022b
gffutils 0.12-foss-2022b
ggfortify 0.4.16-foss-2022b-R-4.3.1
Ghostscript 10.0.0-GCCcore-12.2.0
giflib 5.2.1-GCCcore-12.2.0
git 2.38.1-GCCcore-12.2.0-nodocs
GitPython 3.1.31-GCCcore-12.2.0
GLib 2.75.0-GCCcore-12.2.0
GLM 0.9.9.8-GCCcore-12.2.0
GLPK 5.0-GCCcore-12.2.0
GMAP-GSNAP 2023-04-20-GCC-12.2.0
GMP 6.2.1-GCCcore-12.2.0
gmpy2 2.1.5-GCC-12.2.0
gnuplot 5.4.6-GCCcore-12.2.0
Go 1.22.1
Go 1.21.6
GObject-Introspection 1.74.0-GCCcore-12.2.0
gompi 2022b
googletest 1.12.1-GCCcore-12.2.0
gperf 3.1-GCCcore-12.2.0
gprofiler-official 1.0.0-foss-2022b
Graphene 1.10.8-GCCcore-12.2.0
graphite2 1.3.14-GCCcore-12.2.0
Graphviz 8.1.0-GCCcore-12.2.0
graphviz 0.20.1-foss-2022b
groff 1.22.4-GCCcore-12.2.0
Groovy 4.0.15-Java-17
GSL 2.7-GCCcore-12.2.0
GSL 2.7-GCC-12.2.0
GST-plugins-bad 1.22.5-GCC-12.2.0
GST-plugins-base 1.22.1-GCCcore-12.2.0
GStreamer 1.22.1-GCCcore-12.2.0
GTK3 3.24.35-GCCcore-12.2.0
GTK4 4.11.3-GCC-12.2.0
GTS 0.7.6-GCCcore-12.2.0
Guile 3.0.9-GCCcore-12.2.0
gzip 1.12-GCCcore-12.2.0
h5py 3.8.0-foss-2022b
HarfBuzz 5.3.1-GCCcore-12.2.0
Harminv 1.4.2-foss-2022b
HDF 4.2.15-GCCcore-12.2.0
HDF5 1.14.0-gompi-2022b
hdf5storage 0.1.19-foss-2022b
HDFView 3.2.0-Java-17-centos8
hdWGCNA 20240201-foss-2022b-R-4.3.1
help2man 1.49.2-GCCcore-12.2.0
Highway 1.0.3-GCCcore-12.2.0
HISAT2 2.2.1-gompi-2022b
HMMER 3.3.2-gompi-2022b
hmmlearn 0.3.0-foss-2022b
Horovod 0.28.1-foss-2022b-CUDA-12.0.0-PyTorch-2.1.2
HPL 2.3-foss-2022b
HTSlib 1.17-GCC-12.2.0
hwloc 2.8.0-GCCcore-12.2.0
hypervolume 3.1.3-foss-2022b-R-4.3.1
hypothesis 6.68.2-GCCcore-12.2.0
Hypre 2.27.0-foss-2022b
ICU 72.1-GCCcore-12.2.0
iimpi 2022b
IJulia 1.24.0-Julia-1.10.0
imageio 2.31.1-foss-2022b
ImageMagick 7.1.0-53-GCCcore-12.2.0
Imath 3.1.6-GCCcore-12.2.0
imkl 2022.2.1
imkl-FFTW 2022.2.1-iimpi-2022b
impi 2021.7.1-intel-compilers-2022.2.1
IMPUTE2 2.3.2_x86_64_static
Infernal 1.1.4-foss-2022b
intel 2022b
intel-compilers 2022.2.1
intermine 1.13.0-GCCcore-12.2.0
intervaltree 0.1-GCCcore-12.2.0
intltool 0.51.0-GCCcore-12.2.0
ipykernel 6.25.0-GCCcore-12.2.0
IPython 8.14.0-GCCcore-12.2.0
IQ-TREE 2.2.2.6-gompi-2022b
iRF 3.0.0-foss-2022b-R-4.3.1
IRkernel 1.3.2-foss-2022b-R-4.3.1
ISA-L 2.30.0-GCCcore-12.2.0
JACK 1.9.22-GCCcore-12.2.0
JasPer 4.0.0-GCCcore-12.2.0
Java 21.0.2
Java 17.0.6
Java 17
Java 11.0.18
Java 11
jbigkit 2.1-GCCcore-12.2.0
Jblob 3.0
Jellyfish 2.3.1-GCC-12.2.0
Jellyfish 2.3.0-GCC-12.2.0
jemalloc 5.3.0-GCCcore-12.2.0
json-c 0.16-GCCcore-12.2.0
JsonCpp 1.9.5-GCCcore-12.2.0
json-fortran 8.3.0-GCC-12.2.0
Judy 1.0.5-GCCcore-12.2.0
Julia 1.9.3-linux-x86_64
Julia 1.10.0-linux-x86_64
JupyterLab 4.0.3-GCCcore-12.2.0
jupyter-server 2.7.0-GCCcore-12.2.0
KaHIP 3.14-gompi-2022b
Kaleido 0.2.1-GCCcore-12.2.0
kallisto 0.48.0-gompi-2022b
kinbot 2.2.1-foss-2022b
KMC 3.2.4-GCC-12.2.0
KrakenUniq 1.0.4-GCC-12.2.0
LAME 3.100-GCCcore-12.2.0
LAMMPS-MACE 20240201-foss-2022b-CUDA-12.0.0
LERC 4.0.0-GCCcore-12.2.0
Lethe 20231028-foss-2022b
Lethe 20230901-foss-2022b
libaec 1.0.6-GCCcore-12.2.0
libaio 0.3.113-GCCcore-12.2.0
libarchive 3.6.1-GCCcore-12.2.0
libcerf 2.3-GCCcore-12.2.0
libctl 4.5.1-GCCcore-12.2.0
libdeflate 1.15-GCCcore-12.2.0
libdrm 2.4.114-GCCcore-12.2.0
libepoxy 1.5.10-GCCcore-12.2.0
libevent 2.1.12-GCCcore-12.2.0
libfabric 1.16.1-GCCcore-12.2.0
libffi 3.4.4-GCCcore-12.2.0
libfyaml 0.9-GCCcore-12.2.0
libgd 2.3.3-GCCcore-12.2.0
libGDSII 0.21-GCCcore-12.2.0
libgeotiff 1.7.1-GCCcore-12.2.0
libgit2 1.5.0-GCCcore-12.2.0
libGLU 9.0.2-GCCcore-12.2.0
libglvnd 1.6.0-GCCcore-12.2.0
libiconv 1.17-GCCcore-12.2.0
libidn2 2.3.4-GCCcore-12.2.0
libjpeg-turbo 2.1.4-GCCcore-12.2.0
libogg 1.3.5-GCCcore-12.2.0
libopus 1.3.1-GCCcore-12.2.0
libpciaccess 0.17-GCCcore-12.2.0
libpng 1.6.38-GCCcore-12.2.0
libreadline 8.2-GCCcore-12.2.0
libsigsegv 2.14-GCCcore-12.2.0
libsndfile 1.2.0-GCCcore-12.2.0
libsodium 1.0.18-GCCcore-12.2.0
libtecla 1.6.3-GCCcore-12.2.0
LibTIFF 4.4.0-GCCcore-12.2.0
libtirpc 1.3.3-GCCcore-12.2.0
libtool 2.4.7-GCCcore-12.2.0
libunistring 1.1-GCCcore-12.2.0
libunwind 1.6.2-GCCcore-12.2.0
libvorbis 1.3.7-GCCcore-12.2.0
libwebp 1.3.1-GCCcore-12.2.0
libxc 6.1.0-GCC-12.2.0
libxml2 2.10.3-GCCcore-12.2.0
libxslt 1.1.37-GCCcore-12.2.0
libyaml 0.2.5-GCCcore-12.2.0
LittleCMS 2.14-GCCcore-12.2.0
LLVM 15.0.5-GCCcore-12.2.0
LLVM 14.0.6-GCCcore-12.2.0-llvmlite
LMDB 0.9.29-GCCcore-12.2.0
lpsolve 5.5.2.11-GCC-12.2.0
LSD2 2.4.1-GCCcore-12.2.0
Lua 5.4.4-GCCcore-12.2.0
lxml 4.9.2-GCCcore-12.2.0
lz4 1.9.4-GCCcore-12.2.0
LZO 2.10-GCCcore-12.2.0
M4 1.4.19-GCCcore-12.2.0
M4 1.4.19
M4 1.4.17
MACS3 3.0.1-foss-2022b
maeparser 1.3.1-gompi-2022b
MAFFT 7.505-GCC-12.2.0-with-extensions
maftools 2.16.0-foss-2022b-R-4.3.1
magma 2.7.1-foss-2022b-CUDA-12.0.0
make 4.3-GCCcore-12.2.0
Mako 1.2.4-GCCcore-12.2.0
Mamba 23.1.0-4
MariaDB 10.11.2-GCC-12.2.0
Mash 2.3-GCC-12.2.0
MAST 1.26.0-foss-2022b-R-4.3.1
MATIO 1.5.23-GCCcore-12.2.0
MATLAB 2023b-r6
matplotlib 3.7.0-gfbf-2022b
maturin 1.1.0-GCCcore-12.2.0
Maude 3.1-GCCcore-12.2.0
mctc-lib 0.3.1-GCC-12.2.0
Meep 1.28.0-foss-2022b
Mesa 22.2.4-GCCcore-12.2.0
Meson 1.1.1-GCCcore-12.2.0
Meson 0.64.0-GCCcore-12.2.0
meson-python 0.13.2-GCCcore-12.2.0
meson-python 0.11.0-GCCcore-12.2.0
MetaCortex 64095a8-GCCcore-12.2.0
MetaEuk 6-GCC-12.2.0
metagraph 0.3.6-gfbf-2022b
MetaPhlAn 4.1.0-foss-2022b
METIS 5.1.0-GCCcore-12.2.0
mgcv 1.9-1-foss-2022b-R-4.3.1
Miniconda3 22.11.1-1
Miniforge3 24.1.2-0
MiXCR 4.6.0-Java-17
mlxtend 0.22.0-gfbf-2022b
MMseqs2 14-7e284-gompi-2022b
MNE-Python 1.6.1-foss-2022b
MOFA2 1.10.0-foss-2022b-R-4.3.1
mofapy2 0.7.0-foss-2022b
monocle 2.28.0-foss-2022b-R-4.3.1
Mosaic 3.4
motif 2.3.8-GCCcore-12.2.0
MPB 1.11.1-foss-2022b
MPC 1.3.1-GCCcore-12.2.0
MPFR 4.2.0-GCCcore-12.2.0
mpi4py 3.1.4-gompi-2022b
msgpack 0.5.6-foss-2022b
msgpack-c 6.0.0-GCC-12.2.0
msPurity 1.26.0-foss-2022b-R-4.3.1
MSstats 4.8.6-foss-2022b-R-4.3.1
mstore 0.2.0-GCC-12.2.0
multicharge 0.2.0-gfbf-2022b
multichoose 1.0.3-GCCcore-12.2.0
MUMPS 5.6.1-foss-2022b-metis
muParser 2.3.4-GCCcore-12.2.0
MUSCLE 5.1.0-GCCcore-12.2.0
mvlearn 0.5.0-foss-2022b
NASM 2.15.05-GCCcore-12.2.0
ncbi-vdb 3.0.10-gompi-2022b
NCCL 2.16.2-GCCcore-12.2.0-CUDA-12.0.0
ncurses 6.3-GCCcore-12.2.0
ncurses 6.3
netCDF 4.9.0-gompi-2022b
netcdf4-python 1.6.3-foss-2022b
netCDF-Fortran 4.6.0-gompi-2022b
nettle 3.8.1-GCCcore-12.2.0
networkx 3.0-gfbf-2022b
NextDenovo 2.5.2-GCCcore-12.2.0
Nextflow 24.04.2
NiBabel 5.2.0-gfbf-2022b
Nilearn 0.10.3-gfbf-2022b
Ninja 1.11.1-GCCcore-12.2.0
nlohmann_json 3.11.2-GCCcore-12.2.0
NLopt 2.7.1-GCCcore-12.2.0
NLopt 2.7.1-foss-2022b-Python
NLTK 3.8.1-foss-2022b
nodejs 18.12.1-GCCcore-12.2.0
NSPR 4.35-GCCcore-12.2.0
NSS 3.85-GCCcore-12.2.0
nsync 1.26.0-GCCcore-12.2.0
numactl 2.0.16-GCCcore-12.2.0
numba 0.58.1-foss-2022b
numdiff 5.9.0-GCCcore-12.2.0
occt 7.7.0-foss-2022b
OpenBabel 3.1.1-gompi-2022b
OpenBLAS 0.3.21-GCC-12.2.0
OpenCV 4.8.0-foss-2022b-contrib
OpenEXR 3.1.5-GCCcore-12.2.0
OpenFOAM (OpenCFD Ltd) v2312-foss-2022b
OpenJPEG 2.5.0-GCCcore-12.2.0
OpenMC 0.14.0-foss-2022b
OpenMEEG 2.5.7-foss-2022b
OpenMPI 4.1.4-GCC-12.2.0
OpenPGM 5.2.122-GCCcore-12.2.0
openpyxl 3.1.2-GCCcore-12.2.0
OpenSSL 1.1
Osi 0.108.8-GCC-12.2.0
OSU-Micro-Benchmarks 6.2-gompi-2022b
ottr 1.4.0-foss-2022b-R-4.3.1
p4est 2.3.6-foss-2022b
pandaR 1.32.0-foss-2022b-R-4.3.1
Pandoc 2.13
Pango 1.50.12-GCCcore-12.2.0
parallel 20230722-GCCcore-12.2.0
Parallel-Hashmap 1.3.12-GCCcore-12.2.0
Paralleltask 0.2.2-GCCcore-12.2.0
ParaView 5.11.1-foss-2022b
ParMETIS 4.0.3-gompi-2022b
patchelf 0.17.2-GCCcore-12.2.0
PCRE 8.45-GCCcore-12.2.0
PCRE2 10.40-GCCcore-12.2.0
PDM 2.5.5-GCCcore-12.2.0
pept 0.5.1-foss-2022b
Perl 5.36.0-GCCcore-12.2.0-minimal
Perl 5.36.0-GCCcore-12.2.0
PETSc 3.19.2-foss-2022b
PhiSpy 4.2.21-foss-2022b
PhyloPhlAn 3.0.3-foss-2022b
phytools 2.0-3-foss-2022b-R-4.3.1
picard 2.27.5-Java-11
picard 2.25.1-Java-11
PICI-LIGGGHTS 3.8.1-foss-2022b
pigz 2.7-GCCcore-12.2.0
PILER-CR 1.06-GCC-12.2.0
Pillow 9.4.0-GCCcore-12.2.0
Pillow-SIMD 9.5.0-GCCcore-12.2.0
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protobuf 23.0-GCCcore-12.2.0
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pyproj 3.5.0-GCCcore-12.2.0
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pytest-shard 0.1.2-GCCcore-12.2.0
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Python 3.10.8-GCCcore-12.2.0
Python 2.7.18-GCCcore-12.2.0-bare
python-isal 1.1.0-GCCcore-12.2.0
PyTorch 2.1.2-foss-2022b-CUDA-12.0.0
PyTorch 2.1.2-foss-2022b
PyTorch 1.13.1-foss-2022b
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rclone 1.65.2
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RDKit 2023.03.3-foss-2022b
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Rust 1.73.0-GCCcore-12.2.0
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sympy 1.12-gfbf-2022b
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xarray 2023.4.2-gfbf-2022b
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