Installed Applications: 2022a

Applications available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). In any one job, or session, you should use applications from only one BEAR Apps Version.

Application Version
4ti2 1.6.10-GCC-11.3.0
ABINIT 9.10.5-intel-2022a
ABRicate 1.0.0-gompi-2022a
AdapterRemoval 2.3.3-GCC-11.3.0
adjustText 0.7.3-foss-2022a
aiohttp 3.8.3-GCCcore-11.3.0
AlphaFold 2.3.2-foss-2022a-CUDA-11.7.0
AlphaFold 2.3.2-foss-2022a
AlphaFold 2.3.1-foss-2022a-CUDA-11.7.0
AlphaFold 2.3.1-foss-2022a
AMBiT 3.1.1-foss-2022a
AMS 2023.104-gompi-2022a-openmpi
ANSYS 2023R1
ant 1.10.14-Java-11
ant 1.10.12-Java-11
ANTHRO 20230507-foss-2022a
any2fasta 0.4.2-GCCcore-11.3.0
Archive-Zip 1.68-GCCcore-11.3.0
arpack-ng 3.8.0-foss-2022a
Arrow 8.0.0-foss-2022a-CUDA-11.7.0
Arrow 8.0.0-foss-2022a
arrow-R 8.0.0-foss-2022a-R-4.2.3
ATK 2.38.0-GCCcore-11.3.0
at-spi2-atk 2.38.0-GCCcore-11.3.0
at-spi2-core 2.44.1-GCCcore-11.3.0
AUGUSTUS 3.5.0-foss-2022a
Autoconf 2.71-GCCcore-11.3.0
Autoconf 2.69
Autoconf-archive 2023.02.20-GCCcore-11.3.0
Automake 1.16.5-GCCcore-11.3.0
Autotools 20220317-GCCcore-11.3.0
BamTools 2.5.2-GCC-11.3.0
Barracuda_Virtual_Reactor 22.1.1-GCCcore-11.3.0
Bazel 5.1.1-GCCcore-11.3.0
BCFtools 1.15.1-GCC-11.3.0
bcl2fastq2 2.20.0-GCC-11.3.0
bcl-convert 4.0.3-2el7.x86_64
BEAR-R-bio 2022a-foss-2022a-R-4.2.3
BeautifulSoup 4.10.0-GCCcore-11.3.0
BEDTools 2.30.0-GCC-11.3.0
binutils 2.38-GCCcore-11.3.0
binutils 2.38
binutils 2.35
BiobankRead-Bash 3.1.1-20190507-foss-2022a
Bio-DB-HTS 3.01-GCC-11.3.0
BioPerl 1.7.8-GCCcore-11.3.0
Biopython 1.79-foss-2022a
Bio-SearchIO-hmmer 1.7.3-GCC-11.3.0
BioServices 1.11.2-foss-2022a
Bison 3.8.2-GCCcore-11.3.0
Bison 3.8.2
BLAST+ 2.13.0-gompi-2022a
BLAT 3.7-GCC-11.3.0
Blender 3.4.1-linux-x86_64-CUDA-11.7.0
BLIS 0.9.0-GCC-11.3.0
Blosc 1.21.3-GCCcore-11.3.0
Blosc2 2.6.1-GCCcore-11.3.0
bokeh 2.4.3-foss-2022a
Boost 1.79.0-intel-compilers-2022.1.0
Boost 1.79.0-GCC-11.3.0
Boost.MPI 1.79.0-gompi-2022a
Boost.Python 1.79.0-GCC-11.3.0
Bowtie 1.3.1-GCC-11.3.0
Bowtie2 2.4.5-GCC-11.3.0
Brotli 1.0.9-GCCcore-11.3.0
BWA 0.7.17-GCCcore-11.3.0
bzip2 1.0.8-GCCcore-11.3.0
cairo 1.17.4-GCCcore-11.3.0
cairomm 1.16.2-GCC-11.3.0
Cantera 2.6.0-foss-2022a
canu 2.2-GCCcore-11.3.0
CapnProto 0.10.2-GCCcore-11.3.0
cddlib 0.94m-GCCcore-11.3.0
CD-HIT 4.8.1-GCC-11.3.0
cell2location 0.1.3-foss-2022a-CUDA-11.7.0
cell2location 0.1.3-foss-2022a
Cellpose 2.2-foss-2022a-CUDA-11.7.0
Cellpose 2.2-foss-2022a
CellRanger 7.1.0
Cereal 1.3.0
cffi 1.15.1-GCCcore-11.3.0
CGAL 4.14.3-gompi-2022a
CGmapTools 0.1.3-foss-2022a
Check 0.15.2-GCCcore-11.3.0
Clair3 1.0.4-foss-2022a
Clang 13.0.1-GCCcore-11.3.0
CLHEP 2.4.6.2-GCC-11.3.0
cma 3.3.0-foss-2022a
CMake 3.24.3-GCCcore-11.3.0
CMake 3.23.1-GCCcore-11.3.0
CMake 3.12.1
CodingQuarry 2.0-foss-2022a
coexist 0.3.1-foss-2022a
Compress-Raw-Zlib 2.202-GCCcore-11.3.0
CP2K 2023.2-foss-2022a-CUDA-11.7.0
CP2K 2023.2-foss-2022a
CppUnit 1.15.1-GCCcore-11.3.0
cppy 1.2.1-GCCcore-11.3.0
CUDA 11.7.0
cuDNN 8.4.1.50-CUDA-11.7.0
cURL 7.83.0-GCCcore-11.3.0
Cython 3.0.8-GCCcore-11.3.0
dask 2022.12.0-foss-2022a
dask 2022.10.0-foss-2022a
DB 18.1.40-GCCcore-11.3.0
DBD-mysql 4.050-GCC-11.3.0
DB_File 1.858-GCCcore-11.3.0
DBus 1.14.0-GCCcore-11.3.0
DCMTK 3.6.7-GCCcore-11.3.0
deepdiff 5.8.1-GCCcore-11.3.0
DeepLabCut 2.3.6-foss-2022a-CUDA-11.7.0
DeepLabCut 2.3.6-foss-2022a
deepTools 3.5.2-foss-2022a
delft3dfm 2023.02-intel-2022a
DendroPy 4.5.2-GCCcore-11.3.0
DFT-D4 3.6.0-intel-2022a
DIAMOND 2.1.0-GCC-11.3.0
dill 0.3.6-GCCcore-11.3.0
dm-tree 0.1.8-GCCcore-11.3.0
double-conversion 3.2.0-GCCcore-11.3.0
Doxygen 1.9.4-GCCcore-11.3.0
DSSP 4.4.0-gompi-2022a
DualSPHysics 5.0.233-foss-2022a-CUDA-11.7.0
DualSPHysics 5.0.233-foss-2022a
edlib 1.3.9-GCC-11.3.0
eggnog-mapper 2.1.9-foss-2022a
Eigen 3.4.0-GCCcore-11.3.0
elasticnet 1.3-foss-2022a-R-4.2.3
elfutils 0.187-GCCcore-11.3.0
ESMF 8.3.0-foss-2022a
ETE 3.1.3-foss-2022a
EVidenceModeler 2.1.0-GCCcore-11.3.0
Exonerate 2.4.0-GCC-11.3.0
expat 2.4.8-GCCcore-11.3.0
expecttest 0.1.3-GCCcore-11.3.0
FASTA 36.3.8i-GCC-11.3.0
fastahack 1.0.0-GCCcore-11.3.0
FastTree 2.1.11-GCCcore-11.3.0
FDS 6.8.0-foss-2022a
fermi-lite 20190320-GCCcore-11.3.0
FFmpeg 4.4.2-GCCcore-11.3.0
FFTW 3.3.10-NVHPC-22.7-CUDA-11.7.0
FFTW 3.3.10-GCC-11.3.0
FFTW.MPI 3.3.10-nvompi-2022.07
FFTW.MPI 3.3.10-gompi-2022a
file 5.43-GCCcore-11.3.0
filevercmp 20191210-GCCcore-11.3.0
FLAC 1.3.4-GCCcore-11.3.0
flatbuffers 2.0.7-GCCcore-11.3.0
flatbuffers-python 2.0-GCCcore-11.3.0
flex 2.6.4-GCCcore-11.3.0
flex 2.6.4
FlexiBLAS 3.2.0-NVHPC-22.7-CUDA-11.7.0
FlexiBLAS 3.2.0-GCC-11.3.0
FLINT 2.9.0-gfbf-2022a
fmt 9.1.0-GCCcore-11.3.0
fontconfig 2.14.0-GCCcore-11.3.0
foss 2022a
freebayes 1.3.7-foss-2022a-R-4.2.3
FreeSurfer 7.4.1-centos8_x86_64
freetype 2.12.1-GCCcore-11.3.0
FriBidi 1.0.12-GCCcore-11.3.0
fsom 20151117-GCCcore-11.3.0
funannotate 1.8.17-foss-2022a
fundiversity 1.1.1-foss-2022a-R-4.2.3
gap 4.12.2-foss-2022a
GATK 4.3.0.0-GCCcore-11.3.0-Java-11
Gaussian 16.C.02-AVX2
gawk 5.1.1-GCC-11.3.0
GCC 11.3.0
GCCcore 11.3.0
GDAL 3.5.0-intel-2022a-PROJ-6.3.1
GDAL 3.5.0-foss-2022a
Gdk-Pixbuf 2.42.8-GCCcore-11.3.0
GDRCopy 2.3-GCCcore-11.3.0
Geant4 11.1.2-GCC-11.3.0
Geant4-data 11.1
GeneMark-ET 4.72-GCCcore-11.3.0
gensim 4.3.2-foss-2022a
GEOS 3.10.3-intel-compilers-2022.1.0
GEOS 3.10.3-GCC-11.3.0
gettext 0.21-GCCcore-11.3.0
gettext 0.21
gfastats 1.3.6-GCCcore-11.3.0
gfbf 2022a
gffutils 0.12-foss-2022a
gflags 2.2.2-GCCcore-11.3.0
Ghostscript 9.56.1-GCCcore-11.3.0
giflib 5.2.1-GCCcore-11.3.0
git 2.36.0-GCCcore-11.3.0-nodocs
GitPython 3.1.27-GCCcore-11.3.0
GLib 2.72.1-GCCcore-11.3.0
GlimmerHMM 3.0.4c-GCC-11.3.0
glog 0.6.0-GCCcore-11.3.0
GLPK 5.0-GCCcore-11.3.0
GMAP-GSNAP 2023-02-17-GCC-11.3.0
GMP 6.2.1-GCCcore-11.3.0
gmpy2 2.1.2-GCC-11.3.0
gnuplot 5.4.4-GCCcore-11.3.0
Go 1.17.6
GOATOOLS 1.3.1-foss-2022a
GObject-Introspection 1.72.0-GCCcore-11.3.0
gompi 2022a
googletest 1.11.0-GCCcore-11.3.0
gperf 3.1-GCCcore-11.3.0
Graphene 1.10.8-GCCcore-11.3.0
graphite2 1.3.14-GCCcore-11.3.0
graph-tool 2.55-foss-2022a
Graphviz 5.0.0-GCCcore-11.3.0
groff 1.22.4-GCCcore-11.3.0
GROMACS 2023.3-foss-2022a-CUDA-11.7.0
GROMACS 2023.3-foss-2022a
Groovy 4.0.17-Java-17
GSL 2.7-GCC-11.3.0
GST-plugins-bad 1.20.2-GCC-11.3.0
GST-plugins-base 1.20.2-GCC-11.3.0
GStreamer 1.20.2-GCC-11.3.0
GTK2 2.24.33-GCCcore-11.3.0
GTK3 3.24.33-GCCcore-11.3.0
GTK4 4.7.0-GCC-11.3.0
GTS 0.7.6-GCCcore-11.3.0
Gubbins 3.3.1-foss-2022a
GULP 6.2-foss-2022a
gzip 1.12-GCCcore-11.3.0
h5py 3.7.0-foss-2022a
HarfBuzz 4.2.1-GCCcore-11.3.0
HDBSCAN 0.8.29-foss-2022a
HDF 4.2.15-GCCcore-11.3.0
HDF5 1.13.1-gompi-2022a
HDF5 1.12.2-iimpi-2022a
HDF5 1.12.2-gompi-2022a
help2man 1.49.2-GCCcore-11.3.0
HH-suite 3.3.0-gompi-2022a
HighFive 2.6.2-gompi-2022a
HISAT2 2.2.1-gompi-2022a
HMMER 3.3.2-gompi-2022a
Horovod 0.28.0-foss-2022a-CUDA-11.7.0-PyTorch-2.0.1
HPL 2.3-intel-2022a
HPL 2.3-foss-2022a
HTSlib 1.16-GCC-11.3.0
HTSlib 1.15.1-GCC-11.3.0
hwloc 2.7.1-GCCcore-11.3.0
Hydra 1.3.2-GCCcore-11.3.0
hypothesis 6.46.7-GCCcore-11.3.0
Hypre 2.25.0-intel-2022a
Hypre 2.25.0-foss-2022a
ICU 71.1-GCCcore-11.3.0
igraph 0.10.3-foss-2022a
IGV 2.16.0-Java-11
iimkl 2022a
iimpi 2022a
ilastik 1.4.0-linux-x64
imageio 2.22.2-foss-2022a
ImageMagick 7.1.0-37-GCCcore-11.3.0
Imath 3.1.5-GCCcore-11.3.0
imgaug 0.4.0-foss-2022a-CUDA-11.7.0
imgaug 0.4.0-foss-2022a
imkl 2022.1.0
imkl-FFTW 2022.1.0-iimpi-2022a
impi 2021.6.0-intel-compilers-2022.1.0
Infernal 1.1.4-foss-2022a
intel 2022a
intel-compilers 2022.1.0
InterProScan 5.61-93.0-foss-2022a
intervaltree 0.1-GCCcore-11.3.0
intervaltree-python 3.1.0-GCCcore-11.3.0
intltool 0.51.0-GCCcore-11.3.0
IPython 8.5.0-GCCcore-11.3.0
IQ-TREE 2.2.2.6-gompi-2022a
IRkernel 1.3.2-foss-2022a-R-4.2.3
ISA-L 2.30.0-GCCcore-11.3.0
JasPer 2.0.33-GCCcore-11.3.0
Java 17.0.6
Java 11.0.16
Java 11
jax 0.4.4-foss-2022a-CUDA-11.7.0
jax 0.4.4-foss-2022a
jax 0.3.25-foss-2022a-CUDA-11.7.0
jax 0.3.25-foss-2022a
jax 0.3.23-foss-2022a
jax 0.3.14-foss-2022a-CUDA-11.7.0
jbigkit 2.1-GCCcore-11.3.0
Jellyfish 2.3.0-GCC-11.3.0
jemalloc 5.3.0-GCCcore-11.3.0
jemalloc 5.2.1-GCCcore-11.3.0
JsonCpp 1.9.5-GCCcore-11.3.0
json-fortran 8.3.0-intel-compilers-2022.1.0
Judy 1.0.5-GCCcore-11.3.0
JupyterLab 3.5.0-GCCcore-11.3.0
jupyter-server 1.21.0-GCCcore-11.3.0
Kalign 3.3.5-GCCcore-11.3.0
kallisto 0.48.0-gompi-2022a
Kent_tools 442-GCC-11.3.0
LablGTK 2.18.13-GCC-11.3.0
LABRAT 0.3.0-foss-2022a
LAME 3.100-GCCcore-11.3.0
leidenalg 0.9.1-foss-2022a
Leptonica 1.83.0-GCCcore-11.3.0
Levenshtein 0.22.0-foss-2022a
libaio 0.3.112-GCCcore-11.3.0
libarchive 3.6.1-GCCcore-11.3.0
libcerf 2.1-GCCcore-11.3.0
libcifpp 5.1.0-gompi-2022a
libdeflate 1.10-GCCcore-11.3.0
libdrm 2.4.110-GCCcore-11.3.0
libepoxy 1.5.10-GCCcore-11.3.0
libevent 2.1.12-GCCcore-11.3.0
libfabric 1.15.1-GCCcore-11.3.0
libffi 3.4.2-GCCcore-11.3.0
libgd 2.3.3-GCCcore-11.3.0
libgeotiff 1.7.1-GCCcore-11.3.0-PROJ-6.3.1
libgeotiff 1.7.1-GCCcore-11.3.0
libgit2 1.4.3-GCCcore-11.3.0
libGLU 9.0.2-GCCcore-11.3.0
libglvnd 1.4.0-GCCcore-11.3.0
libiconv 1.17-GCCcore-11.3.0
libidn2 2.3.2-GCCcore-11.3.0
LiBiNorm 2.5
Libint 2.7.2-GCC-11.3.0-lmax-6-cp2k
libjpeg-turbo 2.1.3-GCCcore-11.3.0
libleidenalg 0.11.1-foss-2022a
libmcfp 1.2.4-GCCcore-11.3.0
libogg 1.3.5-GCCcore-11.3.0
libopus 1.3.1-GCCcore-11.3.0
libpciaccess 0.16-GCCcore-11.3.0
libpng 1.6.37-GCCcore-11.3.0
libpng 1.5.30
libreadline 8.1.2-GCCcore-11.3.0
librsvg 2.55.1-GCCcore-11.3.0
libsigc++ 3.4.0-GCCcore-11.3.0
libsndfile 1.1.0-GCCcore-11.3.0
libsodium 1.0.18-GCCcore-11.3.0
LibTIFF 4.3.0-GCCcore-11.3.0
libtirpc 1.3.2-GCCcore-11.3.0
libtool 2.4.7-GCCcore-11.3.0
libunwind 1.6.2-GCCcore-11.3.0
libvorbis 1.3.7-GCCcore-11.3.0
libwebp 1.2.4-GCCcore-11.3.0
libxc 5.2.3-intel-compilers-2022.1.0
libxc 5.2.3-GCC-11.3.0
libxml2 2.9.13-GCCcore-11.3.0
libxslt 1.1.34-GCCcore-11.3.0
libxsmm 1.17-GCC-11.3.0
libyaml 0.2.5-GCCcore-11.3.0
LittleCMS 2.13.1-GCCcore-11.3.0
LLVM 12.0.1-GCCcore-11.3.0
LMDB 0.9.29-GCCcore-11.3.0
LOBSTER 5.0.0
LOBSTER 4.1.0
lollipops 1.6.0
loompy 3.0.7-foss-2022a
lpsolve 5.5.2.11-GCC-11.3.0
lrslib 7.2-gompi-2022a
LSD2 2.3-GCCcore-11.3.0
Lua 5.4.4-GCCcore-11.3.0
lxml 4.9.1-GCCcore-11.3.0
lz4 1.9.3-GCCcore-11.3.0
LZO 2.10-GCCcore-11.3.0
M4 1.4.19-GCCcore-11.3.0
M4 1.4.19
M4 1.4.17
MACS2 2.2.9.1-foss-2022a
MAFFT 7.505-GCC-11.3.0-with-extensions
magma 2.6.2-foss-2022a-CUDA-11.7.0
make 4.3-GCCcore-11.3.0
makeinfo 6.8-GCCcore-11.3.0
Mako 1.2.0-GCCcore-11.3.0
mandrake 1.2.2-foss-2022a
MariaDB 10.9.3-GCC-11.3.0
Mash 2.3-GCC-11.3.0
matplotlib 3.5.2-foss-2022a
MCR R2019b.8
mctc-lib 0.3.1-intel-compilers-2022.1.0
medaka 1.11.1-foss-2022a
Mesa 22.0.3-GCCcore-11.3.0
MESMER 7.0-foss-2022a
Meson 0.62.1-GCCcore-11.3.0
Mesquite 2.3.0-GCCcore-11.3.0
METIS 5.1.0-GCCcore-11.3.0
MICRESS 7.200
Miniconda3 4.12.0
Miniconda3 22.11.1-1
minimap2 2.24-GCCcore-11.3.0
MiXCR 4.3.2-Java-11
mm-common 1.0.5-GCCcore-11.3.0
MMseqs2 14-7e284-gompi-2022a
MNE-Python 1.3.1-foss-2022a
mne-rsa 0.8-foss-2022a
modbam2bed 0.7.0-GCC-11.3.0
MOOSE 2022-06-10-foss-2022a
mozbc 20230507-foss-2022a
mpath 1.1.3-GCCcore-11.3.0
MPC 1.2.1-GCCcore-11.3.0
MPFR 4.1.0-GCCcore-11.3.0
mrc 1.3.9-GCCcore-11.3.0
mstore 0.2.0-intel-compilers-2022.1.0
multicharge 0.2.0-iimkl-2022a
multichoose 1.0.3-GCCcore-11.3.0
multiprocess 0.70.14-GCCcore-11.3.0
MUMmer 4.0.0rc1-GCCcore-11.3.0
MUMPS 5.5.1-intel-2022a-metis
MUMPS 5.5.1-foss-2022a-metis
MUSEN 1.74.0-foss-2022a-CUDA-11.7.0
napari 0.4.17-foss-2022a
NASM 2.15.05-GCCcore-11.3.0
natsort 8.2.0-foss-2022a
ncbi-vdb 3.0.2-gompi-2022a
NCCL 2.12.12-GCCcore-11.3.0-CUDA-11.7.0
ncurses 6.3-GCCcore-11.3.0
ncurses 6.2
ncurses 6.1
ncurses 5.9
ncview 2.1.8-gompi-2022a
netCDF 4.9.0-iimpi-2022a
netCDF 4.9.0-gompi-2022a
netcdf4-python 1.6.1-foss-2022a
netCDF-C++4 4.3.1-gompi-2022a
netCDF-Fortran 4.6.0-iimpi-2022a
netCDF-Fortran 4.6.0-gompi-2022a
nettle 3.8-GCCcore-11.3.0
networkx 2.8.4-foss-2022a
NiBabel 4.0.2-foss-2022a
Ninja 1.10.2-GCCcore-11.3.0
nlohmann_json 3.10.5-GCCcore-11.3.0
NLopt 2.7.1-GCCcore-11.3.0
NLTK 3.8-foss-2022a
nodejs 16.15.1-GCCcore-11.3.0
NSPR 4.34-GCCcore-11.3.0
NSS 3.79-GCCcore-11.3.0
nsync 1.25.0-GCCcore-11.3.0
NTL 11.5.1-GCC-11.3.0
numactl 2.0.14-GCCcore-11.3.0
numba 0.56.4-foss-2022a
numbakit-ode 0.5-foss-2022a
NVHPC 22.7-CUDA-11.7.0
nvofbf 2022.07
nvompi 2022.07
OCaml 4.14.0-GCC-11.3.0
ont-fast5-api 4.1.1-foss-2022a
ont-remora 2.0.0-foss-2022a-CUDA-11.7.0
ont-remora 2.0.0-foss-2022a
OpenBLAS 0.3.20-NVHPC-22.7-CUDA-11.7.0
OpenBLAS 0.3.20-GCC-11.3.0
OpenCV 4.6.0-foss-2022a-CUDA-11.7.0-contrib
OpenCV 4.6.0-foss-2022a-contrib
OpenEXR 3.1.5-GCCcore-11.3.0
OpenFOAM-Extend 5.0-20230821-foss-2022a
OpenFOAM (The OpenFOAM Foundation) 11-foss-2022a
OpenFOAM (The OpenFOAM Foundation) 10-foss-2022a-20230119
OpenJPEG 2.5.0-GCCcore-11.3.0
OpenLB 1.6-0-foss-2022a
OpenMDAO 3.29.0-foss-2022a
OpenMM 8.0.0-foss-2022a-CUDA-11.7.0
OpenMM 8.0.0-foss-2022a
OpenMM 7.7.0-foss-2022a
OpenMPI 4.1.4-NVHPC-22.7-CUDA-11.7.0
OpenMPI 4.1.4-GCC-11.3.0
OpenMPI-container 4.1.4
OpenPGM 5.2.122-GCCcore-11.3.0
OpenPose 1.7.0-foss-2022a-CUDA-11.7.0
openpyxl 3.0.10-GCCcore-11.3.0
OpenSceneGraph 3.6.5-foss-2022a
OpenSSL 1.1
ORCA 5.0.4-foss-2022a-xtb-6.5.1
OSU-Micro-Benchmarks 5.9-iimpi-2022a
OSU-Micro-Benchmarks 5.9-gompi-2022a
panaroo 1.5.0-foss-2022a
Pango 1.50.7-GCCcore-11.3.0
parallel 20220722-GCCcore-11.3.0
parasail 2.6-GCC-11.3.0
ParaView 5.10.1-foss-2022a-mpi
ParMETIS 4.0.3-gompi-2022a
ParMGridGen 1.0-gompi-2022a
PASA 2.5.2-foss-2022a
patchelf 0.15.0-GCCcore-11.3.0
pblat 2.5.1-foss-2022a
pcgr 1.2.0
pcgrr 1.2.0
PCRE 8.45-GCCcore-11.3.0
PCRE2 10.40-GCCcore-11.3.0
PDAL 2.5.5-foss-2022a
pdal-python 3.2.3-foss-2022a
Perl 5.34.1-GCCcore-11.3.0-minimal
Perl 5.34.1-GCCcore-11.3.0
PETSc 3.17.4-intel-2022a
PETSc 3.17.4-foss-2022a
pharokka 1.2.0
picard 2.25.1-Java-11
PICI-LIGGGHTS 3.8.1-foss-2022a-VTK-9.2.2
pigz 2.7-GCCcore-11.3.0
Pillow 9.1.1-GCCcore-11.3.0
Pillow-SIMD 9.2.0-GCCcore-11.3.0
pixman 0.40.0-GCCcore-11.3.0
pkgconf 1.8.0-GCCcore-11.3.0
pkgconf 1.8.0
pkg-config 0.29.2-GCCcore-11.3.0
pkgconfig 1.5.5-GCCcore-11.3.0-python
plotly.py 5.12.0-GCCcore-11.3.0
PLUMED 2.8.1-foss-2022a
PMIx 4.1.2-GCCcore-11.3.0
poetry 1.2.2-GCCcore-11.3.0
polars 0.17.12-foss-2022a
polymake 4.8-gfbf-2022a
poppler 22.12.0-GCC-11.3.0
poppunk 2.6.1-foss-2022a
PostgreSQL 14.4-GCCcore-11.3.0
pp-sketchlib 2.1.1-foss-2022a
PRANK 170427-GCC-11.3.0
prodigal 2.6.3-GCCcore-11.3.0
PROJ 9.0.0-GCCcore-11.3.0
PROJ 6.3.1-GCCcore-11.3.0
prokka 1.14.5-gompi-2022a
Proteinortho 6.2.3-gompi-2022a
protobuf 3.19.4-GCCcore-11.3.0
protobuf-python 3.19.4-GCCcore-11.3.0
ProVerif 2.05-GCC-11.3.0
ptwt 0.1.4.post2-foss-2022a-CUDA-11.7.0
ptwt 0.1.4.post2-foss-2022a
pybedtools 0.9.0-GCC-11.3.0
pyBigWig 0.3.18-foss-2022a
pybind11 2.9.2-GCCcore-11.3.0
PyCairo 1.21.0-GCCcore-11.3.0
py-cpuinfo 9.0.0-GCCcore-11.3.0
pyCycle 4.2.1-foss-2022a
pydantic 1.10.4-GCCcore-11.3.0
pydicom 2.3.0-GCCcore-11.3.0
pydot 1.4.2-GCCcore-11.3.0
pyfaidx 0.7.1-GCCcore-11.3.0
pyfasta 0.5.2-foss-2022a
pyglotaran 0.7.2-foss-2022a
PyGObject 3.42.1-GCCcore-11.3.0
pygraphviz 1.10-GCCcore-11.3.0
PyOpenGL 3.1.6-GCCcore-11.3.0
pyperlin 1.1.0-foss-2022a-CUDA-11.7.0
PyPy 7.3.12-3.10
PyQt5 5.15.5-GCCcore-11.3.0
Pysam 0.20.0-GCC-11.3.0
Pysam 0.19.1-GCC-11.3.0
pySCENIC 0.12.1-foss-2022a
pyseer 1.3.11-foss-2022a
PyTables 3.8.0-foss-2022a
pytesseract 0.3.10-foss-2022a
pytest-xdist 2.5.0-GCCcore-11.3.0
Python 3.10.4-GCCcore-11.3.0-bare
Python 3.10.4-GCCcore-11.3.0
Python 2.7.18-GCCcore-11.3.0-bare
python-igraph 0.10.3-foss-2022a
python-isal 1.1.0-GCCcore-11.3.0
python-parasail 1.3.3-foss-2022a
PyTorch 2.0.1-foss-2022a-CUDA-11.7.0
PyTorch 1.12.1-foss-2022a-CUDA-11.7.0
PyTorch 1.12.1-foss-2022a
PyTorch-Lightning 2.1.0-foss-2022a-CUDA-11.7.0
PyTorch-Lightning 2.0.2-foss-2022a-CUDA-11.7.0
PyTorch-Lightning 1.9.3-foss-2022a-CUDA-11.7.0
PyTorch-Lightning 1.9.3-foss-2022a
pyvista 0.36.1-foss-2022a
PyYAML 6.0-GCCcore-11.3.0
PyZMQ 24.0.1-GCCcore-11.3.0
QD 2.3.23-foss-2022a
Qhull 2020.2-GCCcore-11.3.0
Qt5 5.15.5-GCCcore-11.3.0
Qtconsole 5.4.0-GCCcore-11.3.0
QtPy 2.3.0-GCCcore-11.3.0
QUAST 5.2.0-foss-2022a
QuPath 0.5.0-Java-17
R 4.2.3-foss-2022a
Racon 1.5.0-GCCcore-11.3.0
RagTag 2.1.0-foss-2022a
rapidfuzz 2.13.7-foss-2022a
RapidJSON 1.1.0-GCCcore-11.3.0
rapidNJ 2.3.3-GCCcore-11.3.0
RASPA2 2.0.47-foss-2022a
RAxML 8.2.12-gompi-2022a-avx2
RAxML-NG 1.1.0-GCC-11.3.0
R-bundle-Bioconductor 3.16-foss-2022a-R-4.2.3
RE2 2022-06-01-GCCcore-11.3.0
re2c 2.2-GCCcore-11.3.0
RepeatMasker 4.1.5-foss-2022a
RMBlast 2.13.0-gompi-2022a
RootPainter 0.2.27.0-foss-2022a-CUDA-11.7.0
Rosetta 3.13-foss-2022a
RSEM 1.3.3-foss-2022a
RTG-Tools 3.12.1-Java-11
ruamel.yaml 0.17.21-GCCcore-11.3.0
Rust 1.73.0-GCCcore-11.3.0
Rust 1.65.0-GCCcore-11.3.0
Rust 1.60.0-GCCcore-11.3.0
Salmon 1.9.0-GCC-11.3.0
SAMtools 1.16.1-GCC-11.3.0
SAMtools 0.1.20-GCC-11.3.0
Satsuma2 20220304-GCC-11.3.0
ScaLAPACK 2.2.0-nvompi-2022.07-fb
ScaLAPACK 2.2.0-gompi-2022a-fb
scanpy 1.9.1-foss-2022a
scArches 0.6.1-foss-2022a-CUDA-11.7.0
scArches 0.6.1-foss-2022a
scikit-build 0.15.0-GCCcore-11.3.0
scikit-image 0.19.3-foss-2022a
scikit-learn 1.1.2-foss-2022a
scikit-misc 0.1.4-foss-2022a
SciPy-bundle 2022.05-intel-2022a
SciPy-bundle 2022.05-foss-2022a
SCons 4.4.0-GCCcore-11.3.0
SCons 4.4.0
SCOTCH 7.0.1-iimpi-2022a
SCOTCH 7.0.1-gompi-2022a
scvi-tools 0.20.1-foss-2022a-CUDA-11.7.0
scvi-tools 0.20.1-foss-2022a
SDL2 2.0.22-GCCcore-11.3.0
Seaborn 0.12.1-foss-2022a
SeqLib 1.2.0-GCC-11.3.0
SHAP 0.41.0-foss-2022a
Shapely 1.8.2-foss-2022a
SignalP 6.0h-foss-2022a-fast
Simpack 2023.3-foss-2022a
Singular 4.3.2-gfbf-2022a
SKA2 0.3.4-GCCcore-11.3.0
sklearn-pandas 2.2.0-foss-2022a
SLEPc 3.17.2-foss-2022a
smithwaterman 20160702-GCCcore-11.3.0
SNAP 2.0.1-GCC-11.3.0
snappy 1.1.9-GCCcore-11.3.0
SpaceRanger 2.0.1-GCC-11.3.0
spaCy 3.4.4-foss-2022a
sparsehash 2.0.4-GCCcore-11.3.0
Sphinx-RTD-Theme 1.3.0-GCCcore-11.3.0
SQLite 3.38.3-GCCcore-11.3.0
SRA-Toolkit 3.0.3-gompi-2022a
SSW 1.1-GCCcore-11.3.0
STAR 2.7.10b-GCC-11.3.0
STAR-CCM+ 18.02.008
Stata 17.rev2023-01-10
statsmodels 0.13.1-foss-2022a
steinbock 0.16.1-foss-2022a
StringTie 2.2.1-GCC-11.3.0
Subread 2.0.4-GCC-11.3.0
subunit 1.4.3-GCCcore-11.3.0
SuiteSparse 5.13.0-intel-2022a-METIS-5.1.0
SuiteSparse 5.13.0-foss-2022a-METIS-5.1.0
SUNDIALS 6.5.1-foss-2022a
SuperLU_DIST 8.1.0-foss-2022a
SVG 2.87-GCC-11.3.0
SWIG 4.0.2-GCCcore-11.3.0
sympy 1.11.1-foss-2022a
sympy 1.10.1-foss-2022a
Szip 2.1.1-GCCcore-11.3.0
tabixpp 1.1.2-GCC-11.3.0
tantan 49-GCC-11.3.0
tbb 2021.5.0-GCCcore-11.3.0
tbl2asn 20230713-linux64
tbl2asn 20220427-linux64
Tcl 8.6.12-GCCcore-11.3.0
tcsh 6.24.01-GCCcore-11.3.0
tensorboardX 2.5.1-foss-2022a
TensorFlow 2.11.0-foss-2022a-CUDA-11.7.0
TensorFlow 2.11.0-foss-2022a
tesseract 5.3.0-GCCcore-11.3.0
time 1.9-GCCcore-11.3.0
TIMP 1.13.6-foss-2022a-R-4.2.3
Tk 8.6.12-GCCcore-11.3.0
Tkinter 3.10.4-GCCcore-11.3.0
torchvision 0.15.2-foss-2022a-CUDA-11.7.0
tqdm 4.64.0-GCCcore-11.3.0
Transformers 4.24.0-foss-2022a-CUDA-11.7.0
Transformers 4.24.0-foss-2022a
TRF 4.09.1-GCCcore-11.3.0
trimAl 1.4.1-GCCcore-11.3.0
Trimmomatic 0.39-Java-11
Trinity 2.15.1-foss-2022a
tRNAscan-SE 2.0.11-foss-2022a
UCC 1.0.0-GCCcore-11.3.0
UCC-CUDA 1.0.0-GCCcore-11.3.0-CUDA-11.7.0
UCX 1.12.1-GCCcore-11.3.0
UCX-CUDA 1.12.1-GCCcore-11.3.0-CUDA-11.7.0
UDUNITS 2.2.28-GCCcore-11.3.0
umap-learn 0.5.3-foss-2022a
unimap 0.1-GCCcore-11.3.0
UnZip 6.0-GCCcore-11.3.0
utf8proc 2.7.0-GCCcore-11.3.0
util-linux 2.38-GCCcore-11.3.0
VASP 6.4.2-nvofbf-2022.07
VASP 6.4.2-intel-2022a-DFT-D4
VASP 6.4.2-intel-2022a
VASP 6.4.2-foss-2022a-Wannier90
VASP 6.4.2-foss-2022a
VASP 6.3.2-nvofbf-2022.07
VASP 6.3.2-intel-2022a
VASP 6.3.2-foss-2022a-Wannier90
VASP 6.3.2-foss-2022a
vcflib 1.0.9-foss-2022a-R-4.2.3
VCFtools 0.1.16-GCC-11.3.0
VEP 107-GCC-11.3.0
VTK 9.2.2-foss-2022a
Wand 0.6.11-foss-2022a
wandb 0.13.6-GCC-11.3.0
Wannier90 3.1.0-intel-2022a
Wannier90 3.1.0-foss-2022a-serial
Wayland 1.20.0-GCCcore-11.3.0
WFA2 2.3.3-GCCcore-11.3.0
wget 1.21.3-GCCcore-11.3.0
WhatsHap 1.7-foss-2022a
windspharm 1.7.0-foss-2022a
WPS 4.4-foss-2022a-dmpar
WRF 4.4-foss-2022a-dmpar-chem
WRF 4.4-foss-2022a-dmpar
X11 20220504-GCCcore-11.3.0
x264 20220620-GCCcore-11.3.0
x265 3.5-GCCcore-11.3.0
xarray 2022.9.0-foss-2022a
Xerces-C++ 3.2.4-GCCcore-11.3.0
Xerces-C++ 3.2.3-GCCcore-11.3.0
XlsxWriter 3.0.8-GCCcore-11.3.0
XML-LibXML 2.0207-GCCcore-11.3.0
xorg-macros 1.19.3-GCCcore-11.3.0
xtb 6.5.1-foss-2022a
Xvfb 21.1.3-GCCcore-11.3.0
xxd 8.2.4220-GCCcore-11.3.0
XZ 5.2.5-GCCcore-11.3.0
yaml-cpp 0.7.0-GCCcore-11.3.0
Yasm 1.3.0-GCCcore-11.3.0
Z3 4.10.2-GCCcore-11.3.0
ZeroMQ 4.3.4-GCCcore-11.3.0
Zip 3.0-GCCcore-11.3.0
zlib 1.2.12-GCCcore-11.3.0
zlib 1.2.12
zlib 1.2.11
zstd 1.5.2-GCCcore-11.3.0