Installed Applications: 2019b and EL8-cascadelake

Applications available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). All 2019b or EL8-cascadelake applications. In any one job, or session, you should use applications from only one BEAR Apps Version.

Application Version
acl 2.2.53-GCCcore-8.3.0
aenet 2.0.4-foss-2019b-Python-3.7.4
aenet 2.0.4-foss-2019b-mpi
almosthere 1.0.10-GCCcore-8.3.0
alsa-lib 1.2.4
ant 1.10.7-Java-11
ANTs 2.3.4-foss-2019b-Python-3.7.4
any2fasta 0.4.2-GCCcore-8.3.0
archspec 0.1.0-GCCcore-8.3.0-Python-3.7.4
Armadillo 9.900.2-foss-2019b
arpack-ng 3.7.0-foss-2019b
Arrow 0.16.0-foss-2019b-Python-3.7.4
ASE 3.19.1-iomkl-2019b-Python-3.7.4
ASE 3.19.1-foss-2019b-Python-3.7.4
astropy 4.0-foss-2019b-Python-3.7.4
ATAT 3_36-iomkl-2019b
ATK 2.34.1-GCCcore-8.3.0
at-spi2-atk 2.34.1-GCCcore-8.3.0
at-spi2-core 2.34.0-GCCcore-8.3.0
AUCell 1.8.0-foss-2019b-R-3.6.2
AUGUSTUS 3.3.3-foss-2019b
Autoconf 2.69-GCCcore-8.3.0
AutoDock 4.2.6-GCC-8.3.0
AutoDock_Vina 1.1.2_linux_x86
Automake 1.16.1-GCCcore-8.3.0
Autotools 20180311-GCCcore-8.3.0
BamTools 2.5.1-GCC-8.3.0
basemap 1.2.1-foss-2019b-Python-3.7.4
Bazel 2.0.0-GCCcore-8.3.0
Bazel 0.26.1-GCCcore-8.3.0
BBMap 38.87-GCC-8.3.0
BCFtools 1.10.2-GCC-8.3.0
Beagle 5.1-25Nov19.28d-Java-11
BEAR-Python-DataScience 2019b-foss-2019b-Python-3.7.4
BEAR-Python-DataScience 2019b-foss-2019b-Python-2.7.16
BEAR-Python-Sciences 2019b-foss-2019b-Python-3.7.4
BEAR-R-bio 2019b-foss-2019b-R-3.6.2
BEAR-R-geo 2019b-foss-2019b-R-3.6.2
BeautifulSoup 4.8.2-GCCcore-8.3.0
BEDTools 2.29.2-GCC-8.3.0
BGEN 1.1.6-GCCcore-8.3.0
binutils 2.32-GCCcore-8.3.0
binutils 2.32
Bio-DB-BigFile 1.07-foss-2019b-Perl-5.30.0
Bio-DB-BigFile-jksrc v395-foss-2019b
Bio-DB-HTS 3.01-GCCcore-8.3.0-Perl-5.30.0
biofluff 3.0.3-foss-2019b-Python-3.7.4
biofluff 2.1.4-foss-2019b-Python-2.7.16
BIOMASS 2.1.3-foss-2019b-R-3.6.2
biom-format 2.1.8-foss-2019b-Python-3.7.4
BioPerl 1.7.2-GCCcore-8.3.0-Perl-5.30.0
BioPerl 1.7.2-GCCcore-8.3.0
Biopython 1.75-foss-2019b-Python-3.7.4
Biopython 1.75-foss-2019b-Python-2.7.16
Bismark 0.22.3-foss-2019b
Bison 3.3.2-GCCcore-8.3.0
Bison 3.3.2
Bison 3.0.4
BLAST+ 2.9.0-gompi-2019b
BLAT 3.5-GCCcore-8.3.0
Blosc 1.17.1-GCCcore-8.3.0
bokeh 1.4.0-foss-2019b-Python-3.7.4
Boost 1.71.0-gompi-2019b
Boost.Python 1.71.0-gompi-2019b
Bowtie 1.2.3-GCC-8.3.0
Bowtie2 2.3.5.1-GCC-8.3.0
Bracken 2.6.0-foss-2019b-Python-3.7.4
BUSCO 4.0.5-foss-2019b-Python-3.7.4
BWA 0.7.17-GCC-8.3.0
bzip2 1.0.8-GCCcore-8.3.0
cairo 1.16.0-GCCcore-8.3.0
canu 1.9-GCCcore-8.3.0-Perl-5.30.0
CapnProto 0.8.0-GCCcore-8.3.0
Cartopy 0.18.0-foss-2019b-Python-3.7.4
CATALYST 1.10.3-foss-2019b-R-3.6.2
cba 0.2-21-foss-2019b-R-3.6.2
CD-HIT 4.8.1-GCC-8.3.0
cdsapi 0.2.7-foss-2019b-Python-3.7.4
cellassign 520de59-foss-2019b-Python-3.7.4-R-3.6.2
cellphonedb 2.1.1-foss-2019b-Python-3.7.4-R-3.6.2
Centrifuge 1.0.4-beta-gompi-2019b
ceres-solver 1.14.0-foss-2019b
CFITSIO 3.47-GCCcore-8.3.0
cf-plot 3.0.6-foss-2019b-Python-3.7.4
cf-python 3.4.0-foss-2019b-Python-3.7.4
CGAL 4.14.1-foss-2019b-Python-3.7.4
cgat 0.6.5-foss-2019b-Python-3.7.4
Clang 9.0.1-GCCcore-8.3.0
CLHEP 2.4.1.3-foss-2019b
clingo 5.4.0-GCCcore-8.3.0-Python-3.7.4
ClustalW2 2.1-foss-2019b
ClusterR 1.2.1-foss-2019b-R-3.6.2
clustrd 1.3.7-foss-2019b-R-3.6.2
CMake 3.15.3-GCCcore-8.3.0
CNVnator 0.4.1-foss-2019b-Python-3.7.4
code-server 2.1698
CodingQuarry 2.0-GCC-8.3.0
colorRamps 2.3-foss-2019b-R-3.6.2
commonmark 0.9.1-GCCcore-8.3.0-Python-3.7.4
Coreutils 8.32-GCCcore-8.3.0
CSTools 3.1.0-foss-2019b-R-3.6.2
ctffind 4.1.14-foss-2019b
CUDA 10.1.243-GCC-8.3.0
cuDNN 7.6.4.38-gcccuda-2019b
cURL 7.66.0-GCCcore-8.3.0
cutadapt 2.7-GCCcore-8.3.0-Python-3.7.4
dask 2.8.0-foss-2019b-Python-3.7.4
dateutils 0.4.7-GCCcore-8.3.0
DB 18.1.32-GCCcore-8.3.0
DBD-mysql 4.050-foss-2019b-Perl-5.30.0
DBus 1.13.12-GCCcore-8.3.0
Deepbinner c261ae9-foss-2019b-Python-3.7.4
DendroPy 4.4.0-GCCcore-8.3.0
DIAMOND 0.9.30-GCC-8.3.0
DiffBind 2.14.0-foss-2019b-R-3.6.2
DirichletMultinomial 1.28.0-foss-2019b-R-3.6.2
double-conversion 3.1.4-GCCcore-8.3.0
DoubletFinder 20200901-foss-2019b-R-3.6.2
Doxygen 1.8.16-GCCcore-8.3.0
dropEst 0.8.6-foss-2019b-R-3.6.2
Dynare 4.6.3-foss-2019b
edlib 1.3.8.post1-foss-2019b-Python-3.7.4
eggnog-mapper 1.0.3-foss-2019b-Python-2.7.16
Eigen 3.3.7
elastool 7199f7a-iomkl-2019b-Python-3.7.4-VASP-5.4.4
ELPA 2019.11.001-iomkl-2019b
ELPA 2019.11.001-foss-2019b
ESMF 8.0.1-foss-2019b
ESMPy 8.0.1-foss-2019b-Python-3.7.4
ETE 3.1.2-foss-2019b-Python-3.7.4
ETE 3.1.2-foss-2019b-Python-2.7.16
EVidenceModeler 1.1.1-GCCcore-8.3.0
Exonerate 2.4.0-GCC-8.3.0
expat 2.2.7-GCCcore-8.3.0
eXpress 1.5.3-foss-2019b
FASTA 36.3.8h_04-May-2020-foss-2019b
fasterize 1.0.2-foss-2019b-R-3.6.2
fastp 0.20.1-GCC-8.3.0
FastQC 0.11.9-Java-11
FastQ_Screen 0.14.1-foss-2019b-Perl-5.30.0
FastQTL 2.184_gtex-47180b9-foss-2019b-Python-3.7.4-R-3.6.2
FASTX-Toolkit 0.0.14-GCCcore-8.3.0
FD 1.0-12-foss-2019b-R-3.6.2
FFmpeg 4.2.1-GCCcore-8.3.0
FFTW 3.3.8-gompi-2019b
fgeo 1.1.4-foss-2019b-R-3.6.2
file 5.38-GCCcore-8.3.0
fineSTRUCTURE 4.1.1-foss-2019b
fineSTRUCTURE 4.0.1-foss-2019b
Fiona 1.8.13-foss-2019b-Python-3.7.4
FLASH 1.2.11-GCC-8.3.0
flashpca 20200910-foss-2019b
flex 2.6.4-GCCcore-8.3.0
flex 2.6.4
FLTK 1.3.5-GCC-8.3.0
Flye 2.6-foss-2019b-Python-3.7.4
fontconfig 2.13.1-GCCcore-8.3.0-libpng-1.2.58
fontconfig 2.13.1-GCCcore-8.3.0
foss 2019b
freeglut 3.2.1-GCCcore-8.3.0
freetype 2.10.1-GCCcore-8.3.0-libpng-1.2.58
freetype 2.10.1-GCCcore-8.3.0
FriBidi 1.0.5-GCCcore-8.3.0
funannotate 1.8.1-foss-2019b-Python-3.7.4
funannotate 1.8.1-foss-2019b-Python-2.7.16
fuzzywuzzy 0.18.0-foss-2019b-Python-3.7.4
GAMESS-US 20190930-R2-foss-2019b
GATE 9.0-foss-2019b-Python-3.7.4
Gaussian 09
GBJ 0.5.0-foss-2019b-R-3.6.2
gc 7.6.12-GCCcore-8.3.0
GCC 8.3.0
GCCcore 8.3.0
gcccuda 2019b
GCPy 1.0.3-foss-2019b-Python-3.7.4
gcta 1.93.2-foss-2019b
GDAL 3.0.2-foss-2019b-Python-3.7.4
GDGraph 1.54-foss-2019b-Perl-5.30.0
Gdk-Pixbuf 2.38.2-GCCcore-8.3.0
Geant4 10.06.p03-foss-2019b
Geant4-data 20210510
GeneMark-ET 4.61-GCCcore-8.3.0
GeneSplicer 20130312-foss-2019b
GeoMxNGSPipeline 2.0
geopandas 0.8.1-foss-2019b-Python-3.7.4
GEOS 3.8.0-foss-2019b-Python-3.7.4
gettext 0.20.1-GCCcore-8.3.0
gettext 0.19.8.1
gffread 0.11.6-GCCcore-8.3.0
gflags 2.2.2-GCCcore-8.3.0
Ghostscript 9.50-GCCcore-8.3.0
giflib 5.2.1-GCCcore-8.3.0
git 2.23.0-GCCcore-8.3.0-nodocs
GL2PS 1.4.0-GCCcore-8.3.0
glew 2.1.0-GCCcore-8.3.0
GLib 2.62.0-GCCcore-8.3.0
GlimmerHMM 3.0.4c-GCC-8.3.0
GLM 0.9.9.8-GCCcore-8.3.0
GlobalArrays 5.7.2-iomkl-2019b-peigs
Globus-CLI 1.11.0-GCCcore-8.3.0-Python-3.7.4
glog 0.4.0-GCCcore-8.3.0
GLPK 4.65-GCCcore-8.3.0
GMAP-GSNAP 2020-09-12-foss-2019b
GMP 6.1.2-GCCcore-8.3.0
gnuplot 5.2.8-GCCcore-8.3.0
GObject-Introspection 1.63.1-GCCcore-8.3.0-Python-3.7.4
GObject-Introspection 1.58.3-GCCcore-8.3.0-Python-2.7.16
gompi 2019b
gompic 2019b
googletest 1.10.0-GCCcore-8.3.0
gperf 3.1-GCCcore-8.3.0
gperftools 2.7.90-GCCcore-8.3.0
GPflow 2.1.1-foss-2019b-Python-3.7.4-TensorFlow-2.2.0
graphite2 1.3.14-GCCcore-8.3.0
GROMACS 2019.6-foss-2019b
GSL 2.6-iomkl-2019b
GSL 2.6-GCC-8.3.0
GST-plugins-base 1.16.2-GCC-8.3.0
GStreamer 1.16.2-GCC-8.3.0
gtex-pipeline gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2
GTK+ 3.24.13-GCCcore-8.3.0
GTOOL 0.7.5
Guile 1.8.8-GCCcore-8.3.0
gzip 1.10-GCCcore-8.3.0
h5py 2.10.0-iomkl-2019b-Python-3.7.4
h5py 2.10.0-foss-2019b-Python-3.7.4
h5py 2.10.0-foss-2019b-Python-2.7.16
Hadoop 2.10.0-GCCcore-8.3.0-native
Hail 0.2.61-foss-2019b-Python-3.7.4-Java-1.8
HarfBuzz 2.6.4-GCCcore-8.3.0
harmony 0.1-foss-2019b-R-3.6.2
HDDM 0.7.6-foss-2019b-Python-3.7.4
HDF5 1.10.5-iompi-2019b
HDF5 1.10.5-gompi-2019b
hdf5storage 0.1.15-foss-2019b-Python-3.7.4
help2man 1.47.8-GCCcore-8.3.0
help2man 1.47.4
HEXPRESS 8.1
HISAT2 2.2.1-foss-2019b
HMMER 3.2.1-gompi-2019b
HOMER 4.11-foss-2019b
HPL 2.3-iomkl-2019b
HPL 2.3-foss-2019b
HTSeq 0.12.4-foss-2019b-Python-3.7.4
HTSeq 0.12.4-foss-2019b-Python-2.7.16
HTSlib 1.10.2-GCCcore-8.3.0
hwloc 1.11.12-GCCcore-8.3.0
hypothesis 4.44.2-GCCcore-8.3.0-Python-3.7.4
iccifort 2019.5.281
ICU 65.1-GCCcore-8.3.0
ICU 64.2-GCCcore-8.3.0
igraph 0.8.0-foss-2019b
iimpi 2019b
IJulia 1.21.1-foss-2019b-Julia-1.4.0-Python-3.7.4
imageio 2.6.1-foss-2019b-Python-3.7.4
imageio-ffmpeg 0.3.0-foss-2019b-Python-3.7.4
ImageMagick 7.0.9-5-GCCcore-8.3.0
imgaug 0.4.0-foss-2019b-Python-3.7.4
imkl 2019.5.281-iompi-2019b
imkl 2019.5.281-gompi-2019b
impi 2019.7.217-iccifort-2019.5.281
impi 2018.5.288-iccifort-2019.5.281
IMPUTE2 2.3.2_x86_64_static
InterProScan 5.31-70.0-GCCcore-8.3.0-Python-3.7.4-Java-1.8
intltool 0.51.0-GCCcore-8.3.0
ioapi 3.2-2020111-gompi-2019b-nocpl
iomkl 2019b
iompi 2019b
IPython 7.9.0-foss-2019b-Python-3.7.4
IPython 5.10.0-foss-2019b-Python-2.7.16
iRF 3.0.0-foss-2019b-R-3.6.2
iRF 2.0.0-foss-2019b-R-3.6.2
IRkernel 1.1-foss-2019b-R-3.6.2-Python-3.7.4
ITK 5.0.1-foss-2019b-Python-3.7.4
JasPer 2.0.14-GCCcore-8.3.0
Java 1.8.0_221
Java 1.8
Java 11.0.2
Java 11
jbigkit 2.1-GCCcore-8.3.0
Jellyfish 2.3.0-GCC-8.3.0
jemalloc 5.2.1-GCCcore-8.3.0
Judy 1.0.5-GCCcore-8.3.0
Julia 1.4.0-linux-x86_64
JupyterLab 2.2.8-foss-2019b-Python-3.7.4
JupyterLab 1.2.5-foss-2019b-Python-3.7.4
kallisto 0.46.1-foss-2019b
Kendall 2.2-foss-2019b-R-3.6.2
Kent_tools 401-foss-2019b
Keras 2.3.1-foss-2019b-TensorFlow-1.15.0-Python-3.7.4
Keras 2.3.1-foss-2019b-Python-3.7.4
keras-tuner 1.0.2-foss-2019b-Python-3.7.4
kim-api 2.1.3-iomkl-2019b
kim-api 2.1.3-foss-2019b
KMC 3.1.2rc1-GCC-8.3.0-Python-3.7.4
KneadData 0.7.6-foss-2019b-Python-3.7.4-Java-11
Kraken2 2.0.9-beta-gompi-2019b-Perl-5.30.0
LAME 3.100-GCCcore-8.3.0
LAMMPS 3Mar2020-iomkl-2019b-Python-3.7.4-kokkos
LAMMPS 3Mar2020-foss-2019b-Python-3.7.4-kokkos
LEfSe 1.1-foss-2019b-Python-3.7.4
leidenalg 0.8.0-foss-2019b-Python-3.7.4
libaio 0.3.111-GCCcore-8.3.0
libcerf 1.13-GCCcore-8.3.0
libdrm 2.4.99-GCCcore-8.3.0-libpng-1.2.58
libdrm 2.4.99-GCCcore-8.3.0
libepoxy 1.5.4-GCCcore-8.3.0
libevent 2.1.8
libevent 2.1.11-GCCcore-8.3.0
libffi 3.2.1-GCCcore-8.3.0
libgd 2.2.5-GCCcore-8.3.0
libgeotiff 1.5.1-GCCcore-8.3.0
libGLU 9.0.1-GCCcore-8.3.0
libgtextutils 0.7-GCCcore-8.3.0
libidn 1.35-GCCcore-8.3.0
libjpeg-turbo 2.0.3-GCCcore-8.3.0
libmatheval 1.1.11-GCCcore-8.3.0
libpciaccess 0.14-GCCcore-8.3.0
libpng 1.6.37-GCCcore-8.3.0
libpng 1.2.58-GCCcore-8.3.0
libpng 1.2.58
libreadline 8.0-GCCcore-8.3.0
libRmath 3.6.2-foss-2019b
libsndfile 1.0.28-GCCcore-8.3.0
libsodium 1.0.18-GCCcore-8.3.0
libspatialindex 1.8.5-GCCcore-8.3.0
LibTIFF 4.0.10-GCCcore-8.3.0
libtirpc 1.2.6-GCCcore-8.3.0
libtool 2.4.6-GCCcore-8.3.0
libunistring 0.9.10-GCCcore-8.3.0
libunwind 1.3.1-GCCcore-8.3.0
LibUUID 1.0.3-GCCcore-8.3.0
libxc 4.3.4-iccifort-2019.5.281
libxc 4.3.4-GCC-8.3.0
libxml2 2.9.9-GCCcore-8.3.0
libxslt 1.1.34-GCCcore-8.3.0
libyaml 0.2.2-GCCcore-8.3.0
Liftoff 1.4.2-foss-2019b-Python-3.7.4
Lighter 1.1.2-foss-2019b
limix-bgen 3.0.3-GCCcore-8.3.0
LittleCMS 2.9-GCCcore-8.3.0
LLVM 9.0.0-GCCcore-8.3.0
LLVM 8.0.1-GCCcore-8.3.0
LMDB 0.9.24-GCCcore-8.3.0
LongQC 1.0-foss-2019b-Python-3.7.4
Longshot 0.4.1-GCCcore-8.3.0
lpsolve 5.5.2.5-GCC-8.3.0
Lua 5.3.5-GCCcore-8.3.0
Lua 5.1.5-GCCcore-8.3.0
lxml 4.4.2-GCCcore-8.3.0
lz4 1.9.2-GCCcore-8.3.0
LZO 2.10-GCCcore-8.3.0
M4 1.4.18-GCCcore-8.3.0
M4 1.4.18
M4 1.4.17
MACS2 2.2.7.1-foss-2019b-Python-3.7.4
MAFFT 7.453-GCC-8.3.0-with-extensions
Mako 1.1.0-GCCcore-8.3.0
mappy 2.17-foss-2019b-Python-3.7.4
MariaDB 10.4.12-foss-2019b
MariaDB-connector-c 2.3.7-GCCcore-8.3.0
Mash 2.2-foss-2019b
MATIO 1.5.17-GCCcore-8.3.0
MATLAB 2020a
matplotlib 3.1.1-iomkl-2019b-Python-3.7.4
matplotlib 3.1.1-foss-2019b-Python-3.7.4
matplotlib 2.2.5-foss-2019b-Python-2.7.16
Maven 3.6.3
mayavi 4.7.1-foss-2019b-Python-3.7.4
MedPy 0.4.0-foss-2019b-Python-3.7.4
MEGAHIT 1.2.8-GCCcore-8.3.0
MEGAN_Calc_Code 3.1-foss-2019b
MEGAN_Preprocessor 3.1-foss-2019b
MERLIN 1.1.2-GCCcore-8.3.0
Mesa 19.2.1-GCCcore-8.3.0-libpng-1.2.58-dri
Mesa 19.1.7-GCCcore-8.3.0
Meson 0.51.2-GCCcore-8.3.0-Python-3.7.4
Mesquite 2.3.0-GCCcore-8.3.0
Metal 2011-03-25-foss-2019b
MetaXcan 0.7.3-foss-2019b-Python-3.7.4
METIS 5.1.0-GCCcore-8.3.0
Miniconda3 4.4.10
minimap2 2.17-GCC-8.3.0
miREvo f2abc2a-GCCcore-8.3.0-Perl-5.30.0
MIRTK 20210104-foss-2019b-Python-3.7.4
mitre 1.0b1-foss-2019b-Python-2.7.16
mlpy 3.5.0-foss-2019b-Python-2.7.16
mlst 2.19.0-foss-2019b
MNE-Python 0.20.4-foss-2019b-Python-3.7.4
molmod 1.4.5-iomkl-2019b-Python-3.7.4
molmod 1.4.5-foss-2019b-Python-3.7.4
Mono 6.8.0.105-GCCcore-8.3.0
Monocle3 0.2.1-foss-2019b-R-3.6.2
mosfit 1.1.6-foss-2019b-Python-3.7.4
MPFR 4.0.2-GCCcore-8.3.0
MPI3SNP f03aecf-foss-2019b
MRtrix 3.0-rc-20200326-foss-2019b-Python-3.7.4
MultiQC 1.9-foss-2019b-Python-3.7.4
MUSCLE 3.8.1551-GCC-8.3.0
n2v 0.1.11-foss-2019b-Python-3.7.4
NAG FSL6I26DCL-iomkl-2019b
NAG FLL6I23DCL-iomkl-2019b
NAMD 2.14-foss-2019b-mpi
NanoMod 0.2.2-foss-2019b-Python-2.7.16
NASM 2.14.02-GCCcore-8.3.0
ncbi-vdb 2.10.4-gompi-2019b
NCCL 2.4.8-gcccuda-2019b
ncdf4 1.16.1-foss-2019b-R-3.6.2
ncurses 6.1-GCCcore-8.3.0
ncurses 6.0
netCDF 4.7.1-iompi-2019b
netCDF 4.7.1-gompi-2019b
netcdf4-python 1.5.3-foss-2019b-Python-3.7.4
netCDF-C++4 4.3.1-gompi-2019b
netCDF-Fortran 4.5.2-gompi-2019b
nettle 3.5.1-GCCcore-8.3.0
networkx 2.4-foss-2019b-Python-3.7.4
neuropythy 0.11.8-foss-2019b-Python-3.7.4-Java-11
NGS 2.10.4-GCCcore-8.3.0-Java-11
ngspice 31-foss-2019b
ngsplot 2.63-foss-2019b-Python-2.7.16-R-3.6.2
NiBabel 3.1.0-foss-2019b-Python-3.7.4
Ninja 1.9.0-GCCcore-8.3.0
NLopt 2.6.1-GCCcore-8.3.0
nodejs 12.16.1-GCCcore-8.3.0
NSPR 4.21-GCCcore-8.3.0
NSS 3.45-GCCcore-8.3.0
numactl 2.0.12-GCCcore-8.3.0
numba 0.47.0-foss-2019b-Python-3.7.4
numexpr 2.7.1-foss-2019b-Python-3.7.4
NWChem 7.0.0-iomkl-2019b-Python-3.7.4
oceanmap 0.1.1-foss-2019b-R-3.6.2
ont-fast5-api 2.0.1-foss-2019b-Python-2.7.16
OpenBLAS 0.3.7-GCC-8.3.0
OpenCV 4.2.0-foss-2019b-Python-3.7.4
OpenFOAM-Extend 4.1-20200408-foss-2019b-Python-2.7.16
OpenFOAM (OpenCFD Ltd) v1912-foss-2019b
OpenFOAM (The OpenFOAM Foundation) 6-foss-2019b
OpenJPEG 2.3.1-GCCcore-8.3.0
OpenMC 0.12.0-foss-2019b-Python-3.7.4
OpenMC 0.11.0-foss-2019b-Python-3.7.4
OpenMPI 3.1.6-iccifort-2019.5.281
OpenMPI 3.1.6-gcccuda-2019b
OpenMPI 3.1.6-GCC-8.3.0
OpenPGM 5.2.122-GCCcore-8.3.0
openpyxl 3.0.4-GCCcore-8.3.0-Python-3.7.4
ORCA 4.2.1-gompi-2019b
orca 1.3.0-GCCcore-8.3.0
OSU-Micro-Benchmarks 5.6.3-iompi-2019b
OSU-Micro-Benchmarks 5.6.3-gompi-2019b
OVITO 3.0.0-gompi-2019b
p7zip 16.02-GCC-8.3.0
PAML 4.9j-GCCcore-8.3.0
Pandoc 2.5
Pango 1.44.7-GCCcore-8.3.0
parallel 20190922-GCCcore-8.3.0
ParaView 5.6.2-foss-2019b-Python-3.7.4-mpi
ParMETIS 4.0.3-gompi-2019b
ParMGridGen 1.0-gompi-2019b
PASApipeline 2.4.1-foss-2019b
pavian 81d784d-foss-2019b-R-3.6.2
PCRE 8.43-GCCcore-8.3.0
PCRE2 10.33-GCCcore-8.3.0
pept 0.2.2-foss-2019b-Python-3.7.4
pept 0.1.6-foss-2019b-Python-3.7.4
Peridigm cb9979d-foss-2019b-Python-3.7.4
Perl 5.30.0-GCCcore-8.3.0
PGI 19.10-GCC-8.3.0-2.32
phenoptrReports 0.2.6-foss-2019b-R-3.6.2
picard 2.21.1-Java-11
pigz 2.4-GCCcore-8.3.0
Pillow 6.2.1-GCCcore-8.3.0
Pillow-SIMD 6.0.0-GCCcore-8.3.0
Pilon 1.23-Java-11
PIMD 2.4.0-foss-2019b-aenet
Pingouin 0.3.8-foss-2019b-Python-3.7.4
pixman 0.38.4-GCCcore-8.3.0
pkg-config 0.29.2-GCCcore-8.3.0
pkgconfig 1.5.1-GCCcore-8.3.0-Python-3.7.4
pkgconfig 1.5.1-GCCcore-8.3.0-Python-2.7.16
Platypus 0.8.1-GCCcore-8.3.0-Python-2.7.16
plotly.py 4.5.3-foss-2019b
PLUMED 2.5.3-iomkl-2019b-Python-3.7.4
PLUMED 2.5.3-foss-2019b-Python-3.7.4
pocl 1.4-GCC-8.3.0
poLCA 1.4.1-foss-2019b-R-3.6.2
poppler 0.90.1-foss-2019b
poweRlaw 0.70.6-foss-2019b-R-3.6.2
PPN2V 4e822aa-foss-2019b-Python-3.7.4
presto 7f63f96-foss-2019b-R-3.6.2
PRINSEQ 0.20.4-foss-2019b-Perl-5.30.0
prodigal 2.6.3-GCCcore-8.3.0
PROJ 6.2.1-GCCcore-8.3.0
prokka 1.14.5-gompi-2019b
Proteinortho 6.0.23-foss-2019b-Python-3.7.4-Perl-5.30.0
Proteinortho 6.0.23-foss-2019b-Python-2.7.16-Perl-5.30.0
protobuf 3.10.0-GCCcore-8.3.0-static
protobuf 3.10.0-GCCcore-8.3.0
protobuf 2.5.0-GCCcore-8.3.0
pybedtools 0.8.1-foss-2019b
pybind11 2.4.3-GCCcore-8.3.0-Python-3.7.4
PyCairo 1.18.2-GCCcore-8.3.0
pycoQC 2.5.0.21-foss-2019b-Python-3.7.4
PycURL 7.43.0.5-GCCcore-8.3.0-Python-3.7.4
pyDNase 0.3.0-foss-2019b-Python-3.7.4
pyEGA3 3.4.0-GCCcore-8.3.0-Python-3.7.4
pyfasta 0.5.2-foss-2019b-Python-2.7.16
PyGEOS 0.7.1-foss-2019b-Python-3.7.4
PyMC3 3.8-foss-2019b-Python-3.7.4
PyMieScatt 1.7.5.4-foss-2019b-Python-3.7.4
pyproj 2.4.2-GCCcore-8.3.0-Python-3.7.4
PyQt5 5.13.1-GCCcore-8.3.0-Python-3.7.4
PyQt5 5.13.1-GCCcore-8.3.0-Python-2.7.16
Pyro 1.5.0-foss-2019b-Python-3.7.4
Pysam 0.15.3-GCC-8.3.0
pytabix 0.1-foss-2019b-Python-2.7.16
PyTables 3.6.1-foss-2019b-Python-3.7.4
Python 3.7.4-GCCcore-8.3.0
Python 2.7.16-GCCcore-8.3.0
python-bioformats 4.0.0-foss-2019b-Python-3.7.4
python-igraph 0.8.0-foss-2019b
PyTorch 1.6.0-foss-2019b-Python-3.7.4
PyTorch 1.4.0-foss-2019b-Python-3.7.4
PyTorch 1.3.1-foss-2019b-Python-3.7.4
PyTorch-Geometric 1.4.3-foss-2019b-Python-3.7.4-PyTorch-1.4.0
PyYAML 5.1.2-GCCcore-8.3.0
PyZMQ 18.1.1-foss-2019b-Python-3.7.4
QCTOOL 2.0.8-foss-2019b
Qt5 5.13.1-GCCcore-8.3.0
Qualimap 2.2.1-foss-2019b-R-3.6.2
QuantumESPRESSO 6.7-iomkl-2019b
QuantumESPRESSO 6.6-iomkl-2019b
QuantumESPRESSO 6.6-foss-2019b
R 3.6.2-foss-2019b
Racon 1.4.10-foss-2019b
RAxML-NG 1.0.1-gompi-2019b
R-bundle-Bioconductor 3.10-foss-2019b-R-3.6.2
RDFlib 4.2.2-GCCcore-8.3.0
re2c 1.2.1-GCCcore-8.3.0
readlif 0.2.1-GCCcore-8.3.0-Python-3.7.4
refnx 0.1.17-foss-2019b-Python-3.7.4
RELION 3.1.1-foss-2019b
RepeatMasker 4.0.9-p2-gompi-2019b-HMMER
RFMIX 9505bfa-foss-2019b
rgdal 1.4-8-foss-2019b-R-3.6.2
rgeos 0.5-2-foss-2019b-R-3.6.2
R-keras 2.2.5.0-foss-2019b-Python-3.7.4-R-3.6.2
RMBlast 2.9.0-gompi-2019b
RNA-SeQC 1.1.8-foss-2019b-Java-11
RNAstructure 6.2-foss-2019b-Python-3.7.4
RNetCDF 2.3-1-foss-2019b-R-3.6.2
ROOT 6.20.00-foss-2019b-Python-3.7.4
Rosetta 3.11-foss-2019b-Python-2.7.16
rpy2 3.2.6-foss-2019b-Python-3.7.4
rpy2 2.8.6-foss-2019b-Python-2.7.16
RSEM 1.3.2-foss-2019b
rstanarm 2.21.1-foss-2019b-R-3.6.2
rstudio 1.3.959-foss-2019b-R-3.6.2
rstudio 1.2.5033-foss-2019b-R-3.6.2
rsync 3.2.3-GCCcore-8.3.0-Python-3.7.4
Rtree 0.9.4-GCCcore-8.3.0-Python-3.7.4
rts 1.0-49-foss-2019b-R-3.6.2
Ruby 2.7.1-GCCcore-8.3.0
Rust 1.42.0-GCCcore-8.3.0
rworldmap 1.3-6-foss-2019b-R-3.6.2
s2dv 0.0.1-foss-2019b-R-3.6.2
Salmon 1.1.0-gompi-2019b
samblaster 0.1.26-GCCcore-8.3.0
samclip 0.4.0-GCCcore-8.3.0-Perl-5.30.0
SAMtools 1.10-GCC-8.3.0
ScaLAPACK 2.0.2-gompi-2019b
Scalpel 0.5.4-GCCcore-8.3.0
scikit-image 0.16.2-foss-2019b-Python-3.7.4
scikit-learn 0.21.3-foss-2019b-Python-3.7.4
scikit-learn 0.20.4-foss-2019b-Python-2.7.16
SciPy-bundle 2019.10-iomkl-2019b-Python-3.7.4
SciPy-bundle 2019.10-foss-2019b-Python-3.7.4
SciPy-bundle 2019.10-foss-2019b-Python-2.7.16
SCons 3.1.1-GCCcore-8.3.0
SCOTCH 6.0.9-gompi-2019b
Scrappie 1.4.1-foss-2019b-Python-2.7.16
Scrublet 0.2.1-foss-2019b-Python-3.7.4
scVelo 0.1.25-foss-2019b-Python-3.7.4
scVelo 0.1.24-foss-2019b-Python-3.7.4
SDL2 2.0.10-GCCcore-8.3.0
Seaborn 0.9.1-foss-2019b-Python-2.7.16
Seaborn 0.10.0-foss-2019b-Python-3.7.4
SEPP 4.3.10-foss-2019b-Python-3.7.4
seqtk 1.3-GCC-8.3.0
Seurat 3.2.0-foss-2019b-R-3.6.2
Seurat 3.1.5-foss-2019b-R-3.6.2
sf 0.9-0-foss-2019b-R-3.6.2
sf 0.8-1-foss-2019b-R-3.6.2
SHAP 0.35.0-foss-2019b-Python-3.7.4
SHAPEIT 2.r904.glibcv2.17
Shapely 1.7.0-foss-2019b-Python-3.7.4
shovill 1.1.0-foss-2019b-Python-3.7.4
Signac 1.0.0-foss-2019b-R-3.6.2
Signac 0.2.5-foss-2019b-R-3.6.2
SignalP 5.0b
SigProfilerMatrixGenerator 1.1.7-foss-2019b-Python-3.7.4
SigProfilerMatrixGeneratorR 1.1-foss-2019b-R-3.6.2-Python-3.7.4
SimpleITK 1.2.4-foss-2019b-Python-3.7.4
sinfo 0.3.1-GCCcore-8.3.0-Python-3.7.4
singlecellmethods 6f3a00d-foss-2019b-R-3.6.2
SingleR 1.0.6-foss-2019b-R-3.6.2
SKESA 2.4.0-foss-2019b
sklearn-crfsuite 0.3.6-foss-2019b-Python-3.7.4
SNAP 2013-11-29-GCC-8.3.0
snappy 1.1.7-GCCcore-8.3.0
snippy 4.6.0-foss-2019b-Perl-5.30.0
snpEff 4.5covid19-Java-1.8
SNPTEST 2.5.2
SoupX 1.4.8-foss-2019b-R-3.6.2
SPAdes 3.14.1-GCC-8.3.0-Python-3.7.4
spant 1.4.0-foss-2019b-R-3.6.2
Spark 2.4.1-foss-2019b-Python-3.7.4-Java-1.8
spatialreg 1.1-5-foss-2019b-R-3.6.2
Spectra 0.9.0
spglib-python 1.16.1-iomkl-2019b-Python-3.7.4
SQLite 3.29.0-GCCcore-8.3.0
SquiggleKit 4a8abb5-foss-2019b-Python-2.7.16
STAR 2.7.2b-GCC-8.3.0
statsmodels 0.11.0-foss-2019b-Python-3.7.4
statsmodels 0.10.2-foss-2019b-Python-2.7.16
StringTie 2.1.3-GCC-8.3.0
Subread 2.0.1-GCC-8.3.0
SuiteSparse 5.6.0-foss-2019b-METIS-5.1.0
SunPy 1.1.3-foss-2019b-Python-3.7.4
SWIG 4.0.1-GCCcore-8.3.0
SWIG 3.0.12-GCCcore-8.3.0
Szip 2.1.1-GCCcore-8.3.0
tantan 23-GCCcore-8.3.0
Taxonstand 2.2-foss-2019b-R-3.6.2
tbb 2019_U9-GCCcore-8.3.0
tbl2asn 20230713-linux64
Tcl 8.6.9-GCCcore-8.3.0
TC-Python 2020a-foss-2019b-Python-3.7.4
tcsh 6.22.02-GCCcore-8.3.0
TensorFlow 2.2.0-foss-2019b-Python-3.7.4
TensorFlow 2.0.0-foss-2019b-Python-3.7.4
TensorFlow 1.15.0-foss-2019b-Python-3.7.4
tensorflow-probability 0.10.1-foss-2019b-Python-3.7.4-TensorFlow-2.2.0
tensorflow_probability 0.8.0-foss-2019b-Python-3.7.4
texlive 20200406-foss-2019b
Theano 1.0.4-foss-2019b-Python-3.7.4
Thermo-Calc 2020a-foss-2019b
tifffile 2019.7.26.2-foss-2019b-Python-3.7.4
TIGRAMITE 4.2.0.3-foss-2019b-Python-3.7.4
time 1.9-GCCcore-8.3.0
TinyDB 3.15.2-GCCcore-8.3.0
Tk 8.6.9-GCCcore-8.3.0
Tkinter 3.7.4-GCCcore-8.3.0
Tkinter 2.7.16-GCCcore-8.3.0
tmux 3.0a
Togl 2.1-GCCcore-8.3.0
tombo 7473afe-foss-2019b-Python-3.7.4-cowplot
tombo 1.5.1-foss-2019b-Python-3.7.4
torchvision 0.4.2-foss-2019b-Python-3.7.4
tqdm 4.41.1-GCCcore-8.3.0
TransDecoder 5.5.0-foss-2019b-Perl-5.30.0
trend 1.1.4-foss-2019b-R-3.6.2
TRF 4.09-linux64
Trilinos 12.12.1-foss-2019b-Python-3.7.4
trimAl 1.4.1-GCC-8.3.0
trimesh 3.9.1-foss-2019b-Python-3.7.4
Trim_Galore 0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4
Trimmomatic 0.39-Java-11
Trinity 2.9.1-foss-2019b-Python-3.7.4
Trinity 2.9.1-foss-2019b-Python-2.7.16
tRNAscan-SE 2.0.6-GCCcore-8.3.0
TwoSampleMR 0.5.5-foss-2019b-R-3.6.2
UCX 1.6.1-GCCcore-8.3.0
UDUNITS 2.2.26-GCCcore-8.3.0
ukbtools 0.11.3-foss-2019b-R-3.6.2
uncertainties 3.1.2-foss-2019b
util-linux 2.34-GCCcore-8.3.0
UTMOST 88e9d1d-foss-2019b-Python-2.7.16-R-3.6.2
V8 3.2.0-foss-2019b-R-3.6.2
Valgrind 3.16.0-foss-2019b
variant_tools 3.1.3-foss-2019b-Python-3.7.4
VarScan 2.4.4-Java-1.8
VASP 5.4.4-iomkl-2019b-VTST-180-Python-3.7.4-Perl-5.30.0
VASP 5.4.4-iomkl-2019b
vcf2maf 1.6.18-foss-2019b-Perl-5.30.0
Velvet 1.2.10-foss-2019b-mt-kmer_191
VEP 99.2-foss-2019b-Perl-5.30.0
VGAM 1.1-3-foss-2019b-R-3.6.2
VIBRANT 1.2.1-foss-2019b-Python-3.7.4
Voro++ 0.4.6-iomkl-2019b
Voro++ 0.4.6-foss-2019b
VOTCA 1.5.1-foss-2019b
VSCode 2.1698
vt 2187ff6-foss-2019b
VTK 8.2.0-foss-2019b-Python-3.7.4
WEKA 3.8.4-Java-11
wget 1.20.1-GCCcore-8.3.0
wkhtmltopdf 0.12.4-Linux-x86_64
WPS 4.1-foss-2019b-dmpar
WRF 4.1.3-foss-2019b-dmpar
wxWidgets 3.1.3-GCC-8.3.0
X11 20190717-GCCcore-8.3.0-libpng-1.2.58
X11 20190717-GCCcore-8.3.0
x264 20190925-GCCcore-8.3.0
x265 3.2-GCCcore-8.3.0
xarray 0.15.1-foss-2019b-Python-3.7.4
xESMF 0.3.0-foss-2019b-Python-3.7.4
xgboost 1.0.0.2-foss-2019b-R-3.6.2
XML-LibXML 2.0201-GCCcore-8.3.0
xorg-macros 1.19.2-GCCcore-8.3.0
xprop 1.2.4-GCCcore-8.3.0
Xvfb 1.20.8-GCCcore-8.3.0
xxHash 0.8.0-GCCcore-8.3.0
XZ 5.2.4-GCCcore-8.3.0
yacs 0.1.7-GCCcore-8.3.0
yaff 1.6.0-iomkl-2019b-Python-3.7.4
yaff 1.6.0-foss-2019b-Python-3.7.4
yaml-cpp 0.6.3-GCCcore-8.3.0
Yasm 1.3.0-GCCcore-8.3.0
ZeroMQ 4.3.2-GCCcore-8.3.0
Zip 3.0-GCCcore-8.3.0
zlib 1.2.11-GCCcore-8.3.0
zlib 1.2.11
zstd 1.4.4-GCCcore-8.3.0