Installed Applications: 2019b and EL8-icelake

Applications available on the BEAR systems (BlueBEAR and BEAR Cloud VMs). All 2019b or EL8-icelake applications. In any one job, or session, you should use applications from only one BEAR Apps Version.

Some of the nodes of this architecture have GPUs. The applications that run on the GPU nodes will usually have CUDA or fosscuda as part of the version. Please see the GPU information page for details about the available GPUs and targetting jobs to specific GPU types. The available GPU types are:

  • NVIDIA A100
  • NVIDIA A30
Application Version
acl 2.2.53-GCCcore-8.3.0
aenet 2.0.4-foss-2019b-Python-3.7.4
aenet 2.0.4-foss-2019b-mpi
almosthere 1.0.10-GCCcore-8.3.0
alsa-lib 1.2.4
ant 1.10.7-Java-11
ANTs 2.3.4-foss-2019b-Python-3.7.4
any2fasta 0.4.2-GCCcore-8.3.0
archspec 0.1.0-GCCcore-8.3.0-Python-3.7.4
Armadillo 9.900.2-foss-2019b
arpack-ng 3.7.0-foss-2019b
Arrow 0.16.0-foss-2019b-Python-3.7.4
ASE 3.19.1-iomkl-2019b-Python-3.7.4
ASE 3.19.1-foss-2019b-Python-3.7.4
astropy 4.0-foss-2019b-Python-3.7.4
ATAT 3_36-iomkl-2019b
ATK 2.34.1-GCCcore-8.3.0
at-spi2-atk 2.34.1-GCCcore-8.3.0
at-spi2-core 2.34.0-GCCcore-8.3.0
AUCell 1.8.0-foss-2019b-R-3.6.2
AUGUSTUS 3.3.3-foss-2019b
Autoconf 2.69-GCCcore-8.3.0
AutoDock 4.2.6-GCC-8.3.0
AutoDock_Vina 1.1.2_linux_x86
Automake 1.16.1-GCCcore-8.3.0
Autotools 20180311-GCCcore-8.3.0
BamTools 2.5.1-GCC-8.3.0
basemap 1.2.1-foss-2019b-Python-3.7.4
Bazel 2.0.0-GCCcore-8.3.0
Bazel 0.26.1-GCCcore-8.3.0
BBMap 38.87-GCC-8.3.0
BCFtools 1.10.2-GCC-8.3.0
Beagle 5.1-25Nov19.28d-Java-11
BEAR-Python-DataScience 2019b-foss-2019b-Python-3.7.4
BEAR-Python-DataScience 2019b-foss-2019b-Python-2.7.16
BEAR-Python-Sciences 2019b-foss-2019b-Python-3.7.4
BEAR-R-bio 2019b-foss-2019b-R-3.6.2
BEAR-R-geo 2019b-foss-2019b-R-3.6.2
BeautifulSoup 4.8.2-GCCcore-8.3.0
BEDTools 2.29.2-GCC-8.3.0
BGEN 1.1.6-GCCcore-8.3.0
binutils 2.32-GCCcore-8.3.0
binutils 2.32
Bio-DB-BigFile 1.07-foss-2019b-Perl-5.30.0
Bio-DB-BigFile-jksrc v395-foss-2019b
Bio-DB-HTS 3.01-GCCcore-8.3.0-Perl-5.30.0
biofluff 3.0.3-foss-2019b-Python-3.7.4
biofluff 2.1.4-foss-2019b-Python-2.7.16
BIOMASS 2.1.3-foss-2019b-R-3.6.2
biom-format 2.1.8-foss-2019b-Python-3.7.4
BioPerl 1.7.2-GCCcore-8.3.0-Perl-5.30.0
BioPerl 1.7.2-GCCcore-8.3.0
Biopython 1.75-foss-2019b-Python-3.7.4
Biopython 1.75-foss-2019b-Python-2.7.16
Bismark 0.22.3-foss-2019b
Bison 3.3.2-GCCcore-8.3.0
Bison 3.3.2
Bison 3.0.4
BLAST+ 2.9.0-gompi-2019b
BLAT 3.5-GCCcore-8.3.0
Blosc 1.17.1-GCCcore-8.3.0
bokeh 1.4.0-foss-2019b-Python-3.7.4
Boost 1.71.0-gompi-2019b
Boost.Python 1.71.0-gompi-2019b
Bowtie 1.2.3-GCC-8.3.0
Bowtie2 2.3.5.1-GCC-8.3.0
Bracken 2.6.0-foss-2019b-Python-3.7.4
BUSCO 4.0.5-foss-2019b-Python-3.7.4
BWA 0.7.17-GCC-8.3.0
bzip2 1.0.8-GCCcore-8.3.0
cairo 1.16.0-GCCcore-8.3.0
canu 1.9-GCCcore-8.3.0-Perl-5.30.0
CapnProto 0.8.0-GCCcore-8.3.0
Cartopy 0.18.0-foss-2019b-Python-3.7.4
CATALYST 1.10.3-foss-2019b-R-3.6.2
cba 0.2-21-foss-2019b-R-3.6.2
CD-HIT 4.8.1-GCC-8.3.0
cdsapi 0.2.7-foss-2019b-Python-3.7.4
cellassign 520de59-foss-2019b-Python-3.7.4-R-3.6.2
cellphonedb 2.1.1-foss-2019b-Python-3.7.4-R-3.6.2
Centrifuge 1.0.4-beta-gompi-2019b
ceres-solver 1.14.0-foss-2019b
CFITSIO 3.47-GCCcore-8.3.0
cf-plot 3.0.6-foss-2019b-Python-3.7.4
cf-python 3.4.0-foss-2019b-Python-3.7.4
CGAL 4.14.1-foss-2019b-Python-3.7.4
cgat 0.6.5-foss-2019b-Python-3.7.4
Clang 9.0.1-GCCcore-8.3.0
CLHEP 2.4.1.3-foss-2019b
clingo 5.4.0-GCCcore-8.3.0-Python-3.7.4
ClustalW2 2.1-foss-2019b
ClusterR 1.2.1-foss-2019b-R-3.6.2
clustrd 1.3.7-foss-2019b-R-3.6.2
CMake 3.15.3-GCCcore-8.3.0
CNVnator 0.4.1-foss-2019b-Python-3.7.4
code-server 2.1698
CodingQuarry 2.0-GCC-8.3.0
colorRamps 2.3-foss-2019b-R-3.6.2
commonmark 0.9.1-GCCcore-8.3.0-Python-3.7.4
Coreutils 8.32-GCCcore-8.3.0
CSTools 3.1.0-foss-2019b-R-3.6.2
ctffind 4.1.14-foss-2019b
CUDA 10.1.243-GCC-8.3.0
cuDNN 7.6.4.38-gcccuda-2019b
cURL 7.66.0-GCCcore-8.3.0
cutadapt 2.7-GCCcore-8.3.0-Python-3.7.4
dask 2.8.0-foss-2019b-Python-3.7.4
dateutils 0.4.7-GCCcore-8.3.0
DB 18.1.32-GCCcore-8.3.0
DBD-mysql 4.050-foss-2019b-Perl-5.30.0
DBus 1.13.12-GCCcore-8.3.0
Deepbinner c261ae9-foss-2019b-Python-3.7.4
DendroPy 4.4.0-GCCcore-8.3.0
DIAMOND 0.9.30-GCC-8.3.0
DiffBind 2.14.0-foss-2019b-R-3.6.2
DirichletMultinomial 1.28.0-foss-2019b-R-3.6.2
double-conversion 3.1.4-GCCcore-8.3.0
DoubletFinder 20200901-foss-2019b-R-3.6.2
Doxygen 1.8.16-GCCcore-8.3.0
dropEst 0.8.6-foss-2019b-R-3.6.2
Dynare 4.6.3-foss-2019b
edlib 1.3.8.post1-foss-2019b-Python-3.7.4
eggnog-mapper 1.0.3-foss-2019b-Python-2.7.16
Eigen 3.3.7
elastool 7199f7a-iomkl-2019b-Python-3.7.4-VASP-5.4.4
ELPA 2019.11.001-iomkl-2019b
ELPA 2019.11.001-foss-2019b
ESMF 8.0.1-foss-2019b
ESMPy 8.0.1-foss-2019b-Python-3.7.4
ETE 3.1.2-foss-2019b-Python-3.7.4
ETE 3.1.2-foss-2019b-Python-2.7.16
EVidenceModeler 1.1.1-GCCcore-8.3.0
Exonerate 2.4.0-GCC-8.3.0
expat 2.2.7-GCCcore-8.3.0
eXpress 1.5.3-foss-2019b
FASTA 36.3.8h_04-May-2020-foss-2019b
fasterize 1.0.2-foss-2019b-R-3.6.2
fastp 0.20.1-GCC-8.3.0
FastQC 0.11.9-Java-11
FastQ_Screen 0.14.1-foss-2019b-Perl-5.30.0
FastQTL 2.184_gtex-47180b9-foss-2019b-Python-3.7.4-R-3.6.2
FASTX-Toolkit 0.0.14-GCCcore-8.3.0
FD 1.0-12-foss-2019b-R-3.6.2
FFmpeg 4.2.1-GCCcore-8.3.0
FFTW 3.3.8-gompi-2019b
fgeo 1.1.4-foss-2019b-R-3.6.2
file 5.38-GCCcore-8.3.0
fineSTRUCTURE 4.1.1-foss-2019b
fineSTRUCTURE 4.0.1-foss-2019b
Fiona 1.8.13-foss-2019b-Python-3.7.4
FLASH 1.2.11-GCC-8.3.0
flashpca 20200910-foss-2019b
flex 2.6.4-GCCcore-8.3.0
flex 2.6.4
FLTK 1.3.5-GCC-8.3.0
Flye 2.6-foss-2019b-Python-3.7.4
fontconfig 2.13.1-GCCcore-8.3.0-libpng-1.2.58
fontconfig 2.13.1-GCCcore-8.3.0
foss 2019b
freeglut 3.2.1-GCCcore-8.3.0
freetype 2.10.1-GCCcore-8.3.0-libpng-1.2.58
freetype 2.10.1-GCCcore-8.3.0
FriBidi 1.0.5-GCCcore-8.3.0
funannotate 1.8.1-foss-2019b-Python-3.7.4
funannotate 1.8.1-foss-2019b-Python-2.7.16
fuzzywuzzy 0.18.0-foss-2019b-Python-3.7.4
GAMESS-US 20190930-R2-foss-2019b
GATE 9.0-foss-2019b-Python-3.7.4
Gaussian 09
GBJ 0.5.0-foss-2019b-R-3.6.2
gc 7.6.12-GCCcore-8.3.0
GCC 8.3.0
GCCcore 8.3.0
gcccuda 2019b
GCPy 1.0.3-foss-2019b-Python-3.7.4
gcta 1.93.2-foss-2019b
GDAL 3.0.2-foss-2019b-Python-3.7.4
GDGraph 1.54-foss-2019b-Perl-5.30.0
Gdk-Pixbuf 2.38.2-GCCcore-8.3.0
Geant4 10.06.p03-foss-2019b
Geant4-data 20210510
GeneMark-ET 4.61-GCCcore-8.3.0
GeneSplicer 20130312-foss-2019b
GeoMxNGSPipeline 2.0
geopandas 0.8.1-foss-2019b-Python-3.7.4
GEOS 3.8.0-foss-2019b-Python-3.7.4
gettext 0.20.1-GCCcore-8.3.0
gettext 0.19.8.1
gffread 0.11.6-GCCcore-8.3.0
gflags 2.2.2-GCCcore-8.3.0
Ghostscript 9.50-GCCcore-8.3.0
giflib 5.2.1-GCCcore-8.3.0
git 2.23.0-GCCcore-8.3.0-nodocs
GL2PS 1.4.0-GCCcore-8.3.0
glew 2.1.0-GCCcore-8.3.0
GLib 2.62.0-GCCcore-8.3.0
GlimmerHMM 3.0.4c-GCC-8.3.0
GLM 0.9.9.8-GCCcore-8.3.0
GlobalArrays 5.7.2-iomkl-2019b-peigs
Globus-CLI 1.11.0-GCCcore-8.3.0-Python-3.7.4
glog 0.4.0-GCCcore-8.3.0
GLPK 4.65-GCCcore-8.3.0
GMAP-GSNAP 2020-09-12-foss-2019b
GMP 6.1.2-GCCcore-8.3.0
gnuplot 5.2.8-GCCcore-8.3.0
GObject-Introspection 1.63.1-GCCcore-8.3.0-Python-3.7.4
GObject-Introspection 1.58.3-GCCcore-8.3.0-Python-2.7.16
gompi 2019b
gompic 2019b
googletest 1.10.0-GCCcore-8.3.0
gperf 3.1-GCCcore-8.3.0
gperftools 2.7.90-GCCcore-8.3.0
GPflow 2.1.1-foss-2019b-Python-3.7.4-TensorFlow-2.2.0
graphite2 1.3.14-GCCcore-8.3.0
GROMACS 2019.6-foss-2019b
GSL 2.6-iomkl-2019b
GSL 2.6-GCC-8.3.0
GST-plugins-base 1.16.2-GCC-8.3.0
GStreamer 1.16.2-GCC-8.3.0
gtex-pipeline gtex_v8-foss-2019b-Python-3.7.4-R-3.6.2
GTK+ 3.24.13-GCCcore-8.3.0
GTOOL 0.7.5
Guile 1.8.8-GCCcore-8.3.0
gzip 1.10-GCCcore-8.3.0
h5py 2.10.0-iomkl-2019b-Python-3.7.4
h5py 2.10.0-foss-2019b-Python-3.7.4
h5py 2.10.0-foss-2019b-Python-2.7.16
Hadoop 2.10.0-GCCcore-8.3.0-native
Hail 0.2.61-foss-2019b-Python-3.7.4-Java-1.8
HarfBuzz 2.6.4-GCCcore-8.3.0
harmony 0.1-foss-2019b-R-3.6.2
HDDM 0.7.6-foss-2019b-Python-3.7.4
HDF5 1.10.5-iompi-2019b
HDF5 1.10.5-gompi-2019b
hdf5storage 0.1.15-foss-2019b-Python-3.7.4
help2man 1.47.8-GCCcore-8.3.0
help2man 1.47.4
HISAT2 2.2.1-foss-2019b
HMMER 3.2.1-gompi-2019b
HOMER 4.11-foss-2019b
HPL 2.3-iomkl-2019b
HPL 2.3-foss-2019b
HTSeq 0.12.4-foss-2019b-Python-3.7.4
HTSeq 0.12.4-foss-2019b-Python-2.7.16
HTSlib 1.10.2-GCCcore-8.3.0
hwloc 1.11.12-GCCcore-8.3.0
hypothesis 4.44.2-GCCcore-8.3.0-Python-3.7.4
iccifort 2019.5.281
ICU 65.1-GCCcore-8.3.0
ICU 64.2-GCCcore-8.3.0
igraph 0.8.0-foss-2019b
iimpi 2019b
IJulia 1.21.1-foss-2019b-Julia-1.4.0-Python-3.7.4
imageio 2.6.1-foss-2019b-Python-3.7.4
imageio-ffmpeg 0.3.0-foss-2019b-Python-3.7.4
ImageMagick 7.0.9-5-GCCcore-8.3.0
imgaug 0.4.0-foss-2019b-Python-3.7.4
imkl 2019.5.281-iompi-2019b
imkl 2019.5.281-gompi-2019b
impi 2019.7.217-iccifort-2019.5.281
impi 2018.5.288-iccifort-2019.5.281
IMPUTE2 2.3.2_x86_64_static
InterProScan 5.31-70.0-GCCcore-8.3.0-Python-3.7.4-Java-1.8
intltool 0.51.0-GCCcore-8.3.0
ioapi 3.2-2020111-gompi-2019b-nocpl
iomkl 2019b
iompi 2019b
IPython 7.9.0-foss-2019b-Python-3.7.4
IPython 5.10.0-foss-2019b-Python-2.7.16
iRF 3.0.0-foss-2019b-R-3.6.2
iRF 2.0.0-foss-2019b-R-3.6.2
IRkernel 1.1-foss-2019b-R-3.6.2-Python-3.7.4
ITK 5.0.1-foss-2019b-Python-3.7.4
JasPer 2.0.14-GCCcore-8.3.0
Java 1.8.0_221
Java 1.8
Java 11.0.2
Java 11
jbigkit 2.1-GCCcore-8.3.0
Jellyfish 2.3.0-GCC-8.3.0
jemalloc 5.2.1-GCCcore-8.3.0
Judy 1.0.5-GCCcore-8.3.0
Julia 1.4.0-linux-x86_64
JupyterLab 2.2.8-foss-2019b-Python-3.7.4
JupyterLab 1.2.5-foss-2019b-Python-3.7.4
kallisto 0.46.1-foss-2019b
Kendall 2.2-foss-2019b-R-3.6.2
Kent_tools 401-foss-2019b
Keras 2.3.1-foss-2019b-TensorFlow-1.15.0-Python-3.7.4
Keras 2.3.1-foss-2019b-Python-3.7.4
keras-tuner 1.0.2-foss-2019b-Python-3.7.4
kim-api 2.1.3-iomkl-2019b
kim-api 2.1.3-foss-2019b
KMC 3.1.2rc1-GCC-8.3.0-Python-3.7.4
KneadData 0.7.6-foss-2019b-Python-3.7.4-Java-11
Kraken2 2.0.9-beta-gompi-2019b-Perl-5.30.0
LAME 3.100-GCCcore-8.3.0
LAMMPS 3Mar2020-iomkl-2019b-Python-3.7.4-kokkos
LAMMPS 3Mar2020-foss-2019b-Python-3.7.4-kokkos
LEfSe 1.1-foss-2019b-Python-3.7.4
leidenalg 0.8.0-foss-2019b-Python-3.7.4
libaio 0.3.111-GCCcore-8.3.0
libcerf 1.13-GCCcore-8.3.0
libdrm 2.4.99-GCCcore-8.3.0-libpng-1.2.58
libdrm 2.4.99-GCCcore-8.3.0
libepoxy 1.5.4-GCCcore-8.3.0
libevent 2.1.8
libevent 2.1.11-GCCcore-8.3.0
libffi 3.2.1-GCCcore-8.3.0
libgd 2.2.5-GCCcore-8.3.0
libgeotiff 1.5.1-GCCcore-8.3.0
libGLU 9.0.1-GCCcore-8.3.0
libgtextutils 0.7-GCCcore-8.3.0
libidn 1.35-GCCcore-8.3.0
libjpeg-turbo 2.0.3-GCCcore-8.3.0
libmatheval 1.1.11-GCCcore-8.3.0
libpciaccess 0.14-GCCcore-8.3.0
libpng 1.6.37-GCCcore-8.3.0
libpng 1.2.58-GCCcore-8.3.0
libpng 1.2.58
libreadline 8.0-GCCcore-8.3.0
libRmath 3.6.2-foss-2019b
libsndfile 1.0.28-GCCcore-8.3.0
libsodium 1.0.18-GCCcore-8.3.0
libspatialindex 1.8.5-GCCcore-8.3.0
LibTIFF 4.0.10-GCCcore-8.3.0
libtirpc 1.2.6-GCCcore-8.3.0
libtool 2.4.6-GCCcore-8.3.0
libunistring 0.9.10-GCCcore-8.3.0
libunwind 1.3.1-GCCcore-8.3.0
LibUUID 1.0.3-GCCcore-8.3.0
libxc 4.3.4-iccifort-2019.5.281
libxc 4.3.4-GCC-8.3.0
libxml2 2.9.9-GCCcore-8.3.0
libxslt 1.1.34-GCCcore-8.3.0
libyaml 0.2.2-GCCcore-8.3.0
Liftoff 1.4.2-foss-2019b-Python-3.7.4
Lighter 1.1.2-foss-2019b
limix-bgen 3.0.3-GCCcore-8.3.0
LittleCMS 2.9-GCCcore-8.3.0
LLVM 9.0.0-GCCcore-8.3.0
LLVM 8.0.1-GCCcore-8.3.0
LMDB 0.9.24-GCCcore-8.3.0
LongQC 1.0-foss-2019b-Python-3.7.4
Longshot 0.4.1-GCCcore-8.3.0
lpsolve 5.5.2.5-GCC-8.3.0
Lua 5.3.5-GCCcore-8.3.0
Lua 5.1.5-GCCcore-8.3.0
lxml 4.4.2-GCCcore-8.3.0
lz4 1.9.2-GCCcore-8.3.0
LZO 2.10-GCCcore-8.3.0
M4 1.4.18-GCCcore-8.3.0
M4 1.4.18
M4 1.4.17
MACS2 2.2.7.1-foss-2019b-Python-3.7.4
MAFFT 7.453-GCC-8.3.0-with-extensions
Mako 1.1.0-GCCcore-8.3.0
mappy 2.17-foss-2019b-Python-3.7.4
MariaDB 10.4.12-foss-2019b
MariaDB-connector-c 2.3.7-GCCcore-8.3.0
Mash 2.2-foss-2019b
MATIO 1.5.17-GCCcore-8.3.0
MATLAB 2020a
matplotlib 3.1.1-iomkl-2019b-Python-3.7.4
matplotlib 3.1.1-foss-2019b-Python-3.7.4
matplotlib 2.2.5-foss-2019b-Python-2.7.16
Maven 3.6.3
mayavi 4.7.1-foss-2019b-Python-3.7.4
MedPy 0.4.0-foss-2019b-Python-3.7.4
MEGAHIT 1.2.8-GCCcore-8.3.0
MEGAN_Calc_Code 3.1-foss-2019b
MEGAN_Preprocessor 3.1-foss-2019b
MERLIN 1.1.2-GCCcore-8.3.0
Mesa 19.2.1-GCCcore-8.3.0-libpng-1.2.58-dri
Mesa 19.1.7-GCCcore-8.3.0
Meson 0.51.2-GCCcore-8.3.0-Python-3.7.4
Mesquite 2.3.0-GCCcore-8.3.0
Metal 2011-03-25-foss-2019b
MetaXcan 0.7.3-foss-2019b-Python-3.7.4
METIS 5.1.0-GCCcore-8.3.0
Miniconda3 4.4.10
minimap2 2.17-GCC-8.3.0
miREvo f2abc2a-GCCcore-8.3.0-Perl-5.30.0
MIRTK 20210104-foss-2019b-Python-3.7.4
mitre 1.0b1-foss-2019b-Python-2.7.16
mlpy 3.5.0-foss-2019b-Python-2.7.16
mlst 2.19.0-foss-2019b
MNE-Python 0.20.4-foss-2019b-Python-3.7.4
molmod 1.4.5-iomkl-2019b-Python-3.7.4
molmod 1.4.5-foss-2019b-Python-3.7.4
Mono 6.8.0.105-GCCcore-8.3.0
Monocle3 0.2.1-foss-2019b-R-3.6.2
mosfit 1.1.6-foss-2019b-Python-3.7.4
MPFR 4.0.2-GCCcore-8.3.0
MPI3SNP f03aecf-foss-2019b
MRtrix 3.0-rc-20200326-foss-2019b-Python-3.7.4
MultiQC 1.9-foss-2019b-Python-3.7.4
MUSCLE 3.8.1551-GCC-8.3.0
n2v 0.1.11-foss-2019b-Python-3.7.4
NAG FSL6I26DCL-iomkl-2019b
NAG FLL6I23DCL-iomkl-2019b
NAMD 2.14-foss-2019b-mpi
NanoMod 0.2.2-foss-2019b-Python-2.7.16
NASM 2.14.02-GCCcore-8.3.0
ncbi-vdb 2.10.4-gompi-2019b
NCCL 2.4.8-gcccuda-2019b
ncdf4 1.16.1-foss-2019b-R-3.6.2
ncurses 6.1-GCCcore-8.3.0
ncurses 6.0
netCDF 4.7.1-iompi-2019b
netCDF 4.7.1-gompi-2019b
netcdf4-python 1.5.3-foss-2019b-Python-3.7.4
netCDF-C++4 4.3.1-gompi-2019b
netCDF-Fortran 4.5.2-gompi-2019b
nettle 3.5.1-GCCcore-8.3.0
networkx 2.4-foss-2019b-Python-3.7.4
neuropythy 0.11.8-foss-2019b-Python-3.7.4-Java-11
NGS 2.10.4-GCCcore-8.3.0-Java-11
ngspice 31-foss-2019b
ngsplot 2.63-foss-2019b-Python-2.7.16-R-3.6.2
NiBabel 3.1.0-foss-2019b-Python-3.7.4
Ninja 1.9.0-GCCcore-8.3.0
NLopt 2.6.1-GCCcore-8.3.0
nodejs 12.16.1-GCCcore-8.3.0
NSPR 4.21-GCCcore-8.3.0
NSS 3.45-GCCcore-8.3.0
numactl 2.0.12-GCCcore-8.3.0
numba 0.47.0-foss-2019b-Python-3.7.4
numexpr 2.7.1-foss-2019b-Python-3.7.4
NWChem 7.0.0-iomkl-2019b-Python-3.7.4
oceanmap 0.1.1-foss-2019b-R-3.6.2
ont-fast5-api 2.0.1-foss-2019b-Python-2.7.16
OpenBLAS 0.3.7-GCC-8.3.0
OpenCV 4.2.0-foss-2019b-Python-3.7.4
OpenFOAM-Extend 4.1-20200408-foss-2019b-Python-2.7.16
OpenJPEG 2.3.1-GCCcore-8.3.0
OpenMC 0.12.0-foss-2019b-Python-3.7.4
OpenMC 0.11.0-foss-2019b-Python-3.7.4
OpenMPI 3.1.6-iccifort-2019.5.281
OpenMPI 3.1.6-gcccuda-2019b
OpenMPI 3.1.6-GCC-8.3.0
OpenPGM 5.2.122-GCCcore-8.3.0
openpyxl 3.0.4-GCCcore-8.3.0-Python-3.7.4
ORCA 4.2.1-gompi-2019b
orca 1.3.0-GCCcore-8.3.0
OSU-Micro-Benchmarks 5.6.3-iompi-2019b
OSU-Micro-Benchmarks 5.6.3-gompi-2019b
OVITO 3.0.0-gompi-2019b
p7zip 16.02-GCC-8.3.0
PAML 4.9j-GCCcore-8.3.0
Pandoc 2.5
Pango 1.44.7-GCCcore-8.3.0
parallel 20190922-GCCcore-8.3.0
ParaView 5.6.2-foss-2019b-Python-3.7.4-mpi
ParMETIS 4.0.3-gompi-2019b
ParMGridGen 1.0-gompi-2019b
PASApipeline 2.4.1-foss-2019b
pavian 81d784d-foss-2019b-R-3.6.2
PCRE 8.43-GCCcore-8.3.0
PCRE2 10.33-GCCcore-8.3.0
pept 0.2.2-foss-2019b-Python-3.7.4
pept 0.1.6-foss-2019b-Python-3.7.4
Peridigm cb9979d-foss-2019b-Python-3.7.4
Perl 5.30.0-GCCcore-8.3.0
PGI 19.10-GCC-8.3.0-2.32
phenoptrReports 0.2.6-foss-2019b-R-3.6.2
picard 2.21.1-Java-11
pigz 2.4-GCCcore-8.3.0
Pillow 6.2.1-GCCcore-8.3.0
Pillow-SIMD 6.0.0-GCCcore-8.3.0
Pilon 1.23-Java-11
PIMD 2.4.0-foss-2019b-aenet
Pingouin 0.3.8-foss-2019b-Python-3.7.4
pixman 0.38.4-GCCcore-8.3.0
pkg-config 0.29.2-GCCcore-8.3.0
pkgconfig 1.5.1-GCCcore-8.3.0-Python-3.7.4
pkgconfig 1.5.1-GCCcore-8.3.0-Python-2.7.16
Platypus 0.8.1-GCCcore-8.3.0-Python-2.7.16
plotly.py 4.5.3-foss-2019b
PLUMED 2.5.3-iomkl-2019b-Python-3.7.4
PLUMED 2.5.3-foss-2019b-Python-3.7.4
pocl 1.4-GCC-8.3.0
poLCA 1.4.1-foss-2019b-R-3.6.2
poppler 0.90.1-foss-2019b
poweRlaw 0.70.6-foss-2019b-R-3.6.2
PPN2V 4e822aa-foss-2019b-Python-3.7.4
presto 7f63f96-foss-2019b-R-3.6.2
PRINSEQ 0.20.4-foss-2019b-Perl-5.30.0
prodigal 2.6.3-GCCcore-8.3.0
PROJ 6.2.1-GCCcore-8.3.0
prokka 1.14.5-gompi-2019b
Proteinortho 6.0.23-foss-2019b-Python-3.7.4-Perl-5.30.0
Proteinortho 6.0.23-foss-2019b-Python-2.7.16-Perl-5.30.0
protobuf 3.10.0-GCCcore-8.3.0-static
protobuf 3.10.0-GCCcore-8.3.0
protobuf 2.5.0-GCCcore-8.3.0
pybedtools 0.8.1-foss-2019b
pybind11 2.4.3-GCCcore-8.3.0-Python-3.7.4
PyCairo 1.18.2-GCCcore-8.3.0
pycoQC 2.5.0.21-foss-2019b-Python-3.7.4
PycURL 7.43.0.5-GCCcore-8.3.0-Python-3.7.4
pyDNase 0.3.0-foss-2019b-Python-3.7.4
pyEGA3 3.4.0-GCCcore-8.3.0-Python-3.7.4
pyfasta 0.5.2-foss-2019b-Python-2.7.16
PyGEOS 0.7.1-foss-2019b-Python-3.7.4
PyMC3 3.8-foss-2019b-Python-3.7.4
PyMieScatt 1.7.5.4-foss-2019b-Python-3.7.4
pyproj 2.4.2-GCCcore-8.3.0-Python-3.7.4
PyQt5 5.13.1-GCCcore-8.3.0-Python-3.7.4
PyQt5 5.13.1-GCCcore-8.3.0-Python-2.7.16
Pyro 1.5.0-foss-2019b-Python-3.7.4
Pysam 0.15.3-GCC-8.3.0
pytabix 0.1-foss-2019b-Python-2.7.16
PyTables 3.6.1-foss-2019b-Python-3.7.4
Python 3.7.4-GCCcore-8.3.0
Python 2.7.16-GCCcore-8.3.0
python-bioformats 4.0.0-foss-2019b-Python-3.7.4
python-igraph 0.8.0-foss-2019b
PyTorch 1.6.0-foss-2019b-Python-3.7.4
PyTorch 1.4.0-foss-2019b-Python-3.7.4
PyTorch 1.3.1-foss-2019b-Python-3.7.4
PyTorch-Geometric 1.4.3-foss-2019b-Python-3.7.4-PyTorch-1.4.0
PyYAML 5.1.2-GCCcore-8.3.0
PyZMQ 18.1.1-foss-2019b-Python-3.7.4
QCTOOL 2.0.8-foss-2019b
Qt5 5.13.1-GCCcore-8.3.0
Qualimap 2.2.1-foss-2019b-R-3.6.2
QuantumESPRESSO 6.7-iomkl-2019b
QuantumESPRESSO 6.6-iomkl-2019b
QuantumESPRESSO 6.6-foss-2019b
R 3.6.2-foss-2019b
Racon 1.4.10-foss-2019b
RAxML-NG 1.0.1-gompi-2019b
R-bundle-Bioconductor 3.10-foss-2019b-R-3.6.2
RDFlib 4.2.2-GCCcore-8.3.0
re2c 1.2.1-GCCcore-8.3.0
readlif 0.2.1-GCCcore-8.3.0-Python-3.7.4
refnx 0.1.17-foss-2019b-Python-3.7.4
RELION 3.1.1-foss-2019b
RepeatMasker 4.0.9-p2-gompi-2019b-HMMER
RFMIX 9505bfa-foss-2019b
rgdal 1.4-8-foss-2019b-R-3.6.2
rgeos 0.5-2-foss-2019b-R-3.6.2
R-keras 2.2.5.0-foss-2019b-Python-3.7.4-R-3.6.2
RMBlast 2.9.0-gompi-2019b
RNA-SeQC 1.1.8-foss-2019b-Java-11
RNAstructure 6.2-foss-2019b-Python-3.7.4
RNetCDF 2.3-1-foss-2019b-R-3.6.2
ROOT 6.20.00-foss-2019b-Python-3.7.4
Rosetta 3.11-foss-2019b-Python-2.7.16
rpy2 3.2.6-foss-2019b-Python-3.7.4
rpy2 2.8.6-foss-2019b-Python-2.7.16
RSEM 1.3.2-foss-2019b
rstanarm 2.21.1-foss-2019b-R-3.6.2
rstudio 1.3.959-foss-2019b-R-3.6.2
rstudio 1.2.5033-foss-2019b-R-3.6.2
rsync 3.2.3-GCCcore-8.3.0-Python-3.7.4
Rtree 0.9.4-GCCcore-8.3.0-Python-3.7.4
rts 1.0-49-foss-2019b-R-3.6.2
Ruby 2.7.1-GCCcore-8.3.0
Rust 1.42.0-GCCcore-8.3.0
rworldmap 1.3-6-foss-2019b-R-3.6.2
s2dv 0.0.1-foss-2019b-R-3.6.2
Salmon 1.1.0-gompi-2019b
samblaster 0.1.26-GCCcore-8.3.0
samclip 0.4.0-GCCcore-8.3.0-Perl-5.30.0
SAMtools 1.10-GCC-8.3.0
ScaLAPACK 2.0.2-gompi-2019b
Scalpel 0.5.4-GCCcore-8.3.0
scikit-image 0.16.2-foss-2019b-Python-3.7.4
scikit-learn 0.21.3-foss-2019b-Python-3.7.4
scikit-learn 0.20.4-foss-2019b-Python-2.7.16
SciPy-bundle 2019.10-iomkl-2019b-Python-3.7.4
SciPy-bundle 2019.10-foss-2019b-Python-3.7.4
SciPy-bundle 2019.10-foss-2019b-Python-2.7.16
SCons 3.1.1-GCCcore-8.3.0
SCOTCH 6.0.9-gompi-2019b
Scrappie 1.4.1-foss-2019b-Python-2.7.16
Scrublet 0.2.1-foss-2019b-Python-3.7.4
scVelo 0.1.25-foss-2019b-Python-3.7.4
scVelo 0.1.24-foss-2019b-Python-3.7.4
SDL2 2.0.10-GCCcore-8.3.0
Seaborn 0.9.1-foss-2019b-Python-2.7.16
Seaborn 0.10.0-foss-2019b-Python-3.7.4
SEPP 4.3.10-foss-2019b-Python-3.7.4
seqtk 1.3-GCC-8.3.0
Seurat 3.2.0-foss-2019b-R-3.6.2
Seurat 3.1.5-foss-2019b-R-3.6.2
sf 0.9-0-foss-2019b-R-3.6.2
sf 0.8-1-foss-2019b-R-3.6.2
SHAP 0.35.0-foss-2019b-Python-3.7.4
SHAPEIT 2.r904.glibcv2.17
Shapely 1.7.0-foss-2019b-Python-3.7.4
shovill 1.1.0-foss-2019b-Python-3.7.4
Signac 1.0.0-foss-2019b-R-3.6.2
Signac 0.2.5-foss-2019b-R-3.6.2
SignalP 5.0b
SigProfilerMatrixGenerator 1.1.7-foss-2019b-Python-3.7.4
SigProfilerMatrixGeneratorR 1.1-foss-2019b-R-3.6.2-Python-3.7.4
SimpleITK 1.2.4-foss-2019b-Python-3.7.4
sinfo 0.3.1-GCCcore-8.3.0-Python-3.7.4
singlecellmethods 6f3a00d-foss-2019b-R-3.6.2
SingleR 1.0.6-foss-2019b-R-3.6.2
SKESA 2.4.0-foss-2019b
sklearn-crfsuite 0.3.6-foss-2019b-Python-3.7.4
SNAP 2013-11-29-GCC-8.3.0
snappy 1.1.7-GCCcore-8.3.0
snippy 4.6.0-foss-2019b-Perl-5.30.0
snpEff 4.5covid19-Java-1.8
SNPTEST 2.5.2
SoupX 1.4.8-foss-2019b-R-3.6.2
SPAdes 3.14.1-GCC-8.3.0-Python-3.7.4
spant 1.4.0-foss-2019b-R-3.6.2
Spark 2.4.1-foss-2019b-Python-3.7.4-Java-1.8
spatialreg 1.1-5-foss-2019b-R-3.6.2
Spectra 0.9.0
spglib-python 1.16.1-iomkl-2019b-Python-3.7.4
SQLite 3.29.0-GCCcore-8.3.0
SquiggleKit 4a8abb5-foss-2019b-Python-2.7.16
STAR 2.7.2b-GCC-8.3.0
statsmodels 0.11.0-foss-2019b-Python-3.7.4
statsmodels 0.10.2-foss-2019b-Python-2.7.16
StringTie 2.1.3-GCC-8.3.0
Subread 2.0.1-GCC-8.3.0
SuiteSparse 5.6.0-foss-2019b-METIS-5.1.0
SunPy 1.1.3-foss-2019b-Python-3.7.4
SWIG 4.0.1-GCCcore-8.3.0
SWIG 3.0.12-GCCcore-8.3.0
Szip 2.1.1-GCCcore-8.3.0
tantan 23-GCCcore-8.3.0
Taxonstand 2.2-foss-2019b-R-3.6.2
tbb 2019_U9-GCCcore-8.3.0
tbl2asn 20230713-linux64
Tcl 8.6.9-GCCcore-8.3.0
TC-Python 2020a-foss-2019b-Python-3.7.4
tcsh 6.22.02-GCCcore-8.3.0
TensorFlow 2.2.0-foss-2019b-Python-3.7.4
TensorFlow 2.0.0-foss-2019b-Python-3.7.4
TensorFlow 1.15.0-foss-2019b-Python-3.7.4
tensorflow-probability 0.10.1-foss-2019b-Python-3.7.4-TensorFlow-2.2.0
tensorflow_probability 0.8.0-foss-2019b-Python-3.7.4
texlive 20200406-foss-2019b
Theano 1.0.4-foss-2019b-Python-3.7.4
Thermo-Calc 2020a-foss-2019b
tifffile 2019.7.26.2-foss-2019b-Python-3.7.4
TIGRAMITE 4.2.0.3-foss-2019b-Python-3.7.4
time 1.9-GCCcore-8.3.0
TinyDB 3.15.2-GCCcore-8.3.0
Tk 8.6.9-GCCcore-8.3.0
Tkinter 3.7.4-GCCcore-8.3.0
Tkinter 2.7.16-GCCcore-8.3.0
tmux 3.0a
Togl 2.1-GCCcore-8.3.0
tombo 7473afe-foss-2019b-Python-3.7.4-cowplot
tombo 1.5.1-foss-2019b-Python-3.7.4
torchvision 0.4.2-foss-2019b-Python-3.7.4
tqdm 4.41.1-GCCcore-8.3.0
TransDecoder 5.5.0-foss-2019b-Perl-5.30.0
trend 1.1.4-foss-2019b-R-3.6.2
TRF 4.09-linux64
Trilinos 12.12.1-foss-2019b-Python-3.7.4
trimAl 1.4.1-GCC-8.3.0
trimesh 3.9.1-foss-2019b-Python-3.7.4
Trim_Galore 0.6.5-GCCcore-8.3.0-Java-11-Python-3.7.4
Trimmomatic 0.39-Java-11
Trinity 2.9.1-foss-2019b-Python-3.7.4
Trinity 2.9.1-foss-2019b-Python-2.7.16
tRNAscan-SE 2.0.6-GCCcore-8.3.0
TwoSampleMR 0.5.5-foss-2019b-R-3.6.2
UCX 1.6.1-GCCcore-8.3.0
UDUNITS 2.2.26-GCCcore-8.3.0
ukbtools 0.11.3-foss-2019b-R-3.6.2
uncertainties 3.1.2-foss-2019b
util-linux 2.34-GCCcore-8.3.0
UTMOST 88e9d1d-foss-2019b-Python-2.7.16-R-3.6.2
V8 3.2.0-foss-2019b-R-3.6.2
Valgrind 3.16.0-foss-2019b
variant_tools 3.1.3-foss-2019b-Python-3.7.4
VarScan 2.4.4-Java-1.8
VASP 5.4.4-iomkl-2019b-VTST-180-Python-3.7.4-Perl-5.30.0
VASP 5.4.4-iomkl-2019b
vcf2maf 1.6.18-foss-2019b-Perl-5.30.0
Velvet 1.2.10-foss-2019b-mt-kmer_191
VEP 99.2-foss-2019b-Perl-5.30.0
VGAM 1.1-3-foss-2019b-R-3.6.2
VIBRANT 1.2.1-foss-2019b-Python-3.7.4
Voro++ 0.4.6-iomkl-2019b
Voro++ 0.4.6-foss-2019b
VOTCA 1.5.1-foss-2019b
VSCode 2.1698
vt 2187ff6-foss-2019b
VTK 8.2.0-foss-2019b-Python-3.7.4
WEKA 3.8.4-Java-11
wget 1.20.1-GCCcore-8.3.0
wkhtmltopdf 0.12.4-Linux-x86_64
WPS 4.1-foss-2019b-dmpar
WRF 4.1.3-foss-2019b-dmpar
wxWidgets 3.1.3-GCC-8.3.0
X11 20190717-GCCcore-8.3.0-libpng-1.2.58
X11 20190717-GCCcore-8.3.0
x264 20190925-GCCcore-8.3.0
x265 3.2-GCCcore-8.3.0
xarray 0.15.1-foss-2019b-Python-3.7.4
xESMF 0.3.0-foss-2019b-Python-3.7.4
xgboost 1.0.0.2-foss-2019b-R-3.6.2
XML-LibXML 2.0201-GCCcore-8.3.0
xorg-macros 1.19.2-GCCcore-8.3.0
xprop 1.2.4-GCCcore-8.3.0
Xvfb 1.20.8-GCCcore-8.3.0
xxHash 0.8.0-GCCcore-8.3.0
XZ 5.2.4-GCCcore-8.3.0
yacs 0.1.7-GCCcore-8.3.0
yaff 1.6.0-iomkl-2019b-Python-3.7.4
yaff 1.6.0-foss-2019b-Python-3.7.4
yaml-cpp 0.6.3-GCCcore-8.3.0
Yasm 1.3.0-GCCcore-8.3.0
ZeroMQ 4.3.2-GCCcore-8.3.0
Zip 3.0-GCCcore-8.3.0
zlib 1.2.11-GCCcore-8.3.0
zlib 1.2.11
zstd 1.4.4-GCCcore-8.3.0